Pairwise Alignments

Query, 516 a.a., DNA topoisomerase III (EC 5.99.1.2) in PFGI-1-like cluster from Pseudomonas fluorescens FW300-N2E2

Subject, 694 a.a., DNA topoisomerase III (RefSeq) from Shewanella amazonensis SB2B

 Score =  315 bits (807), Expect = 3e-90
 Identities = 195/502 (38%), Positives = 277/502 (55%), Gaps = 16/502 (3%)

Query: 24  MRLFLCEKPSQGKDIARVLGA-RQRGSGCFK-GVGISVTWCIGHLVEAAPPETYDERFKQ 81
           M L++ EKPS G+ IA VL    ++G G  + G G  VTWCIGHL+E A P+ Y   +KQ
Sbjct: 25  MILYIAEKPSLGRAIAEVLPKPHKKGEGYIELGNGDCVTWCIGHLLEQAEPDAYSPEYKQ 84

Query: 82  WSLDHLPILPISWRVRVKANTAAQYKIVKQLLAQTSELVIATDADREGEMIAREVLELCQ 141
           W L HLPI+P  W++  +++  +Q  +VK+L+ Q S LV A D DREG+++  EV+   +
Sbjct: 85  WQLAHLPIIPAEWKLTPRSSAKSQLAVVKRLIKQASSLVHAGDPDREGQLLVDEVISHAK 144

Query: 142 YRGS----IQRLWLSALNDASIRKALSQLRQAEETQSLYHSALARSRADWLIGMNMSRLF 197
              S     QRL +S LN  ++R+AL QLR  +E   L  SALARSRADWL G+NM+R +
Sbjct: 145 VSASKLASTQRLLISDLNPDAVRRALGQLRSNKEFVPLATSALARSRADWLYGLNMTRAY 204

Query: 198 TLLGRQAGLNGVLSVGRVQTPTLRLVVDRDREIERFVPRPYWVIQVKLEV-LGQAFTAQW 256
           TL GR+ G  GVLSVGRVQTP L LVV RD +IE F P+ ++ +   +    G++F A+W
Sbjct: 205 TLQGRKVGYAGVLSVGRVQTPLLGLVVRRDLDIEHFEPKDHYEVLAHITTDKGESFCAKW 264

Query: 257 AAPDSAT---DEAGRCIRQAIALQAQQSFKATGVAQVLEVETQRTREAPPLPFDLNTLQE 313
              ++     DE GR + + +A +   S      A V  V  +  ++APPL + L+ LQ 
Sbjct: 265 QPSEACQPYMDEEGRVLSRRLA-ETVVSRIGGKPALVEHVSHKDKKQAPPLLYSLSALQI 323

Query: 314 VCSRRLGYGVQETLDIAQSLYETHKATTYPRTDSGYLPESMLLEAEAVFAALIKSDPGVG 373
            C++R G   +E LD AQSLYE HK  TYPR+DS +LP+  L     V +A+  + P + 
Sbjct: 324 DCAKRFGMSAKEVLDTAQSLYERHKLITYPRSDSRHLPKEQLALVPDVLSAVSANAPELL 383

Query: 374 PLVQSVDFTLRSRAWNDSQVSAHHGIIPTLEPFDRLALSERECAVYELIRARYLAQFLPP 433
               S D  L S+AW+DS+V AHH I+PT +      L++RE  +Y  I  +YLAQF P 
Sbjct: 384 EGAPSPDLHLVSKAWDDSKVDAHHAIVPTGKRTALSQLNQRERQLYLHIARQYLAQFYPN 443

Query: 434 HEYDRTAVQLTCGNHVLKAHGKHVVESGWHRVLGSECPPQRRRSVATQPNATRPARGCLL 493
                T +QL        A        GW  +       Q       + +A++      L
Sbjct: 444 RLLADTEIQLIIEGGSFIARASVERAPGWRVLFQGRSTEQDEAKEPQETDASQKTPLPAL 503

Query: 494 QRGG-----RGAKVPQDSAPPK 510
            +G       G  + + + PPK
Sbjct: 504 NKGDIARCCHGELLAKQTQPPK 525