Pairwise Alignments

Query, 516 a.a., DNA topoisomerase III (EC 5.99.1.2) in PFGI-1-like cluster from Pseudomonas fluorescens FW300-N2E2

Subject, 702 a.a., DNA topoisomerase III (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  316 bits (810), Expect = 2e-90
 Identities = 181/456 (39%), Positives = 266/456 (58%), Gaps = 11/456 (2%)

Query: 24  MRLFLCEKPSQGKDIARVLGA-RQRGSGCFKGV-GISVTWCIGHLVEAAPPETYDERFKQ 81
           M L++ EKPS G+ IA VL    ++G G  +   G  V+WC+GHL+E A P+ Y+  FK 
Sbjct: 1   MILYIAEKPSLGRAIADVLPKPHKKGEGFIEDANGNCVSWCVGHLLEQAEPDAYNPDFKS 60

Query: 82  WSLDHLPILPISWRVRVKANTAAQYKIVKQLLAQTSELVIATDADREGEMIAREVLELCQ 141
           W  +HLPI+P  W+++ KA T +Q  ++K+L+ Q   LV A D DREG+++  EV+    
Sbjct: 61  WKFEHLPIVPEKWQLKPKAATRSQLTVLKKLIKQADTLVNAGDPDREGQLLVDEVIAYLG 120

Query: 142 YRGS----IQRLWLSALNDASIRKALSQLRQAEETQSLYHSALARSRADWLIGMNMSRLF 197
             G      QRL +S LN  ++++ALSQLR   E   L  SALARSRADWL GMNM+R +
Sbjct: 121 VTGDKLQQTQRLLISDLNPQAVKRALSQLRSNREFIPLSTSALARSRADWLYGMNMTRAY 180

Query: 198 TLLGRQAGLNGVLSVGRVQTPTLRLVVDRDREIERFVPRPYWVIQVKLEV-LGQAFTAQW 256
           T+ G++ G  GVLSVGRVQTP L L+V RD EI  F  +P++ +   L     Q F+A+W
Sbjct: 181 TIQGKKVGYQGVLSVGRVQTPLLGLIVRRDEEIAHFQSKPFYEVLAHLVTDKQQFFSAKW 240

Query: 257 AAPDSAT---DEAGRCIRQAIALQAQQSFKATGVAQVLEVETQRTREAPPLPFDLNTLQE 313
              ++     D+ GR + + +A    +       A+V ++ T+  +++ PLP+ L+ LQ 
Sbjct: 241 QPSEACQPYMDDEGRVLSKGLAQNVVRRI-TDKPAKVTQLSTKDKQQSAPLPYSLSALQI 299

Query: 314 VCSRRLGYGVQETLDIAQSLYETHKATTYPRTDSGYLPESMLLEAEAVFAALIKSDPGVG 373
             ++R G   +E LD  QSLYE HK  TYPR+DS YLP      A +V  A+    P + 
Sbjct: 300 DAAKRFGMSAKEVLDTCQSLYERHKLITYPRSDSRYLPTEQHGLASSVLNAITSGAPELV 359

Query: 374 PLVQSVDFTLRSRAWNDSQVSAHHGIIPTLEPFDRLALSERECAVYELIRARYLAQFLPP 433
              ++ +  L+S+AW+D +V AHH IIPT +  +  +LS+RE  +Y  I  +YLAQF P 
Sbjct: 360 AHSEAPNPRLKSKAWDDKKVDAHHAIIPTEKQPNLGSLSQRERQLYLHIARQYLAQFYPA 419

Query: 434 HEYDRTAVQLTCGNHVLKAHGKHVVESGWHRVLGSE 469
           + Y  TAV++T    + K   +     GW ++   E
Sbjct: 420 YCYSETAVEVTIEGGLFKTKARQDKSLGWKQLFARE 455