Pairwise Alignments

Query, 516 a.a., DNA topoisomerase III (EC 5.99.1.2) in PFGI-1-like cluster from Pseudomonas fluorescens FW300-N2E2

Subject, 704 a.a., DNA topoisomerase III (RefSeq) from Shewanella sp. ANA-3

 Score =  327 bits (838), Expect = 9e-94
 Identities = 185/456 (40%), Positives = 266/456 (58%), Gaps = 11/456 (2%)

Query: 24  MRLFLCEKPSQGKDIARVLGA-RQRGSGCFKGV-GISVTWCIGHLVEAAPPETYDERFKQ 81
           M L++ EKPS G+ IA VL    ++G G  +   G  V+WC+GHL+E A P+ Y+  FK 
Sbjct: 1   MILYIAEKPSLGRAIADVLPKPHKKGDGFIEDAQGNCVSWCVGHLLEQAEPDAYNPEFKS 60

Query: 82  WSLDHLPILPISWRVRVKANTAAQYKIVKQLLAQTSELVIATDADREGEMIAREVLELCQ 141
           W  +HLPI+P  W+++ KA T +Q  ++K+L+ Q   LV A D DREG+++  EV+    
Sbjct: 61  WKFEHLPIVPEKWQLKPKAATRSQLTVLKKLVKQADTLVNAGDPDREGQLLVDEVIAYLG 120

Query: 142 YRGS----IQRLWLSALNDASIRKALSQLRQAEETQSLYHSALARSRADWLIGMNMSRLF 197
             G      QRL +S LN  ++++ALSQLR   E   L  SALARSRADWL GMNM+R +
Sbjct: 121 VTGDKLQQTQRLLISDLNPQAVKRALSQLRSNREFIPLSTSALARSRADWLYGMNMTRAY 180

Query: 198 TLLGRQAGLNGVLSVGRVQTPTLRLVVDRDREIERFVPRPYWVIQVKLEV-LGQAFTAQW 256
           T+ G++ G  GVLSVGRVQTP L L+V RD EI  F  +P++ +   L     Q FTA+W
Sbjct: 181 TIQGKKVGYQGVLSVGRVQTPLLGLIVRRDEEIANFQSKPFYEVLAHLVTDKDQTFTAKW 240

Query: 257 AAPDSAT---DEAGRCIRQAIALQAQQSFKATGVAQVLEVETQRTREAPPLPFDLNTLQE 313
              ++     DE GR + + +A    +       A+V ++ T+  ++ PPLP+ L+ LQ 
Sbjct: 241 QPSEACLPYMDEEGRVLAKGLAQNVVRRI-TDKPAKVTQLSTKDKQQNPPLPYSLSALQI 299

Query: 314 VCSRRLGYGVQETLDIAQSLYETHKATTYPRTDSGYLPESMLLEAEAVFAALIKSDPGVG 373
             ++R G   ++ LD  QSLYE HK  TYPR+DS YLP      A  V AA++   P + 
Sbjct: 300 DAAKRFGMSAKDVLDTCQSLYERHKLITYPRSDSRYLPTEQHALASGVLAAIMGGAPELV 359

Query: 374 PLVQSVDFTLRSRAWNDSQVSAHHGIIPTLEPFDRLALSERECAVYELIRARYLAQFLPP 433
              ++ +  L+S+AW+D +V AHH IIPT +  +   LS+RE  +Y  I  +YLAQF P 
Sbjct: 360 AHAEAPNPRLKSKAWDDKKVDAHHAIIPTEKQPNLAGLSQRERQLYLHIARQYLAQFYPA 419

Query: 434 HEYDRTAVQLTCGNHVLKAHGKHVVESGWHRVLGSE 469
           + Y  TAV++T    + K   K     GW ++   E
Sbjct: 420 YCYSETAVEVTIEGGLFKTKAKQDKSLGWKQLFARE 455