Pairwise Alignments

Query, 378 a.a., Outer membrane protein romA from Pseudomonas fluorescens FW300-N2E2

Subject, 362 a.a., Zn-dependent hydrolase of the beta-lactamase fold (RefSeq) from Shewanella loihica PV-4

 Score =  224 bits (572), Expect = 2e-63
 Identities = 125/341 (36%), Positives = 184/341 (53%), Gaps = 5/341 (1%)

Query: 26  LPSGERLTRIEHSPNH-ADGVFRNQIDTPMKTTDQSEISMWMQTLFGQEGQPRPPSPI-P 83
           L SG++L   E + +H +DG F+N      + +    I M   T    +  P    P+ P
Sbjct: 16  LASGDQLASREPAAHHRSDGGFQNTATNLTENSGMGAILMRYLTETRIDASPSKAIPLMP 75

Query: 84  AVKTDLKALDPTQDIVVWLGHSSYFVQLGGQRILIDPVFSTYAAPIPGVNKAFEGTSLYT 143
             +  + AL  +QD V+ LGHSS  +++ GQ  LIDPVFS  A+P   +           
Sbjct: 76  LTRDGIAALPDSQDSVIRLGHSSILLKIAGQTWLIDPVFSDRASPFSFIGPKRFHQPPIA 135

Query: 144 ADDIPEIDALLISHDHYDHLDYPTVLALQPKVRKVIVGLGVGAHFERWGYDMGVVREADW 203
            + +PEID +LISHDHYDHLD  ++  L  KV++ IV LGV  H  RWG     V+  DW
Sbjct: 136 LEQLPEIDGVLISHDHYDHLDEESIKQLHHKVKRFIVPLGVEQHLLRWGVANDKVQPLDW 195

Query: 204 NEVIALTPNVRVHVTTARHYSGR-TFTRDQSLWVGFALVSPEQRLFFSGDSGYGPHFAEI 262
            + + L   + +  T  +H+SGR  + ++Q+LW  + + S   +L+FSGDSGY   F  I
Sbjct: 196 WQSVTLG-KLSITATPTQHFSGRGLWDKNQTLWASYVIQSDRSKLYFSGDSGYFDGFKAI 254

Query: 263 GQRMGPFDYVAIDAGQYDPRWANVHMNPEQAAQAAKDLHARVLMQTHVGRFSIAPHDWDD 322
           G+R GPFD   I+ G YD  W ++HM PEQ+ QA  DL  R +M  H G F +A H W +
Sbjct: 255 GERFGPFDLTMIETGAYDKDWPSIHMTPEQSLQAHLDLGGRQMMPIHNGTFDLAFHSWYE 314

Query: 323 PFKRMQVASQGQTFALWTPEIGRTVYLDGRAQSFTAWWEDD 363
           P +R+   +      L TP +G+ + +    +S  AWW ++
Sbjct: 315 PLERIAALAADANTQLITPIVGQVLDIHNTPES-VAWWREE 354