Pairwise Alignments

Query, 1051 a.a., RND efflux system, inner membrane transporter CmeB from Pseudomonas fluorescens FW300-N2E2

Subject, 1055 a.a., multidrug transporter from Pseudomonas fluorescens FW300-N2E3

 Score = 1596 bits (4132), Expect = 0.0
 Identities = 793/1055 (75%), Positives = 927/1055 (87%), Gaps = 4/1055 (0%)

Query: 1    MSKYFIDRPIFAWVLALIIMLVGALSILNLPINQYPDIAPPAVAIQVSYPGASAQTVQDT 60
            MSK+FIDRPIFAWV+AL+IMLVGALSIL LPINQYP IAPPA+AI V+YPGASAQTVQDT
Sbjct: 1    MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAISVTYPGASAQTVQDT 60

Query: 61   VVQVIEQQMNGIDNLRYISSESNADGSMRIIVTFNQGTNPDIAQVQVQNKLNLATPLLPR 120
            VVQVIEQQ+NGIDNLRY+SSESN+DGSM I  TF QGTN D AQVQVQNKLNLATPLLP+
Sbjct: 61   VVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNSDTAQVQVQNKLNLATPLLPQ 120

Query: 121  EVQQQGLRVTKFQQNFMMFIGLVSTDGKHTKEDLSNYIVSNIQDPISRTSGVGDFQIWGT 180
            EVQQQG+RVTK  +NF+M IG+VS DG  TK+DLSNYIVSN+QDPISRT+GVGDFQ++G 
Sbjct: 121  EVQQQGIRVTKAVKNFLMVIGVVSRDGSMTKDDLSNYIVSNMQDPISRTAGVGDFQVFGA 180

Query: 181  QYAMRVWLDPAKLNQFQLTPVDVTEAIEAQNVQVASGTIGGLPARKGTVFTATIIGKTRL 240
            QYAMR+WLDPAKLN F LTPVDV  AI AQNVQV+SG +GGLPA  G    ATIIGKTRL
Sbjct: 181  QYAMRIWLDPAKLNNFNLTPVDVKTAIAAQNVQVSSGQLGGLPALPGQQLNATIIGKTRL 240

Query: 241  QTSEQFGDILLKVNSDGSQVRLSDVADISLGGENYSINAQANGKPASGIAIRLATGANAL 300
            QT+EQF +ILL+VN DGSQVRLSDVAD+ LGGENYSI+AQ NG PASG+A++LA GANAL
Sbjct: 241  QTAEQFKEILLRVNKDGSQVRLSDVADVGLGGENYSISAQFNGSPASGLAVKLANGANAL 300

Query: 301  DTARAIRATVDRLKPFFPAGIEAVYPYDTTPVVTESISGVMHTLGEAVVLVFLVMLLFLQ 360
            DTA+A+R T+D LKPFFP G+E V+PYDTTPVVTESI GV+ TL EA+VLVFLVM LFLQ
Sbjct: 301  DTAKALRKTIDNLKPFFPEGMEVVFPYDTTPVVTESIKGVVETLVEAIVLVFLVMFLFLQ 360

Query: 361  NLRATIITTLTVPVVLLGTFGVLAAAGFSINTLTMFGMILAIGLLVDDAIVVVENVERVM 420
            N RAT+ITT+TVPVVLLGTFG+LAA GFSINTLTMFGM+LAIGLLVDDAIVVVENVERVM
Sbjct: 361  NFRATVITTMTVPVVLLGTFGILAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420

Query: 421  AEEHLSPREATRKSMGQIQGALVGIALVLSAVLLPMAFFGGSTGVIYRQFSITIVSAMAL 480
            +EE LSP+EAT+KSMGQIQGALVGIALVLSAVLLPMAFF GSTGVIY+QFSITIVSAMAL
Sbjct: 421  SEEGLSPKEATKKSMGQIQGALVGIALVLSAVLLPMAFFSGSTGVIYKQFSITIVSAMAL 480

Query: 481  SVFVALVFTPALCATLLKPIDPTKHGQPKRGFFGWFNRRFDACVNGYEQGVGQIIRHRVP 540
            SV VAL+FTPALCAT+LK I   +HG PKRGFFGWFNR FD  V  YE+GVG +++H+ P
Sbjct: 481  SVLVALIFTPALCATMLKAIPKGEHGTPKRGFFGWFNRNFDRSVRSYERGVGNMLKHKAP 540

Query: 541  GFMVYLVIVAGTIWMFARIPTSFLPDEDQGLIFTQVQTPANSSAETTQKVLDRMSQYLL- 599
              + Y++IV G IW+F RIPT+FLP+EDQG++F QVQTPA S+++ TQ V+D M ++LL 
Sbjct: 541  YLLAYIIIVVGMIWLFTRIPTAFLPEEDQGVLFAQVQTPAGSTSQRTQVVVDEMREFLLR 600

Query: 600  -DKEHGEGKAVATVFTVNGFNFAGRGQNSGIAFVNLKPWDERDSDNTVFKIAQRAQQEFL 658
              K+ GEG AV +VFTV GFNFAGRGQ+SG+AF+ L+PW ER++DN+VFK+A RAQQ F 
Sbjct: 601  PGKDGGEGDAVNSVFTVTGFNFAGRGQSSGMAFIMLRPWAERNADNSVFKVAARAQQHFF 660

Query: 659  KYRDALVYAVVPPSVLELGNATGFDFYLQDQDSVGHQKLMEARGKFLELAAQSPVLAGVR 718
             +RDA+V+A  PP+VLELGNATGFD +LQD+  +GH KLM AR +FL +AAQS VL+ VR
Sbjct: 661  TFRDAMVFAFAPPAVLELGNATGFDVFLQDRAGIGHDKLMAARNQFLGMAAQSKVLSQVR 720

Query: 719  PNGLADEPQYHLTIDDERARAMGISLADINTTLSVAYGSSYVNDFVDRGRVKRVYVQGQP 778
            PNGL DEPQY L IDDE+A A+GI++ DIN TLS+A GSSYVNDF+DRGRVK+VYVQGQP
Sbjct: 721  PNGLNDEPQYQLEIDDEKASALGITMTDINNTLSIALGSSYVNDFIDRGRVKKVYVQGQP 780

Query: 779  DSRSTAEDLSKWFVRNNQGQMVPFSAFASAEWIFGSPKLSRYNGVPAEQILGTPAPGYSS 838
             +R + EDL KW+VRN+QG MVPFSAFA  EWI+GSPKL+RYNGV A +ILG+PAPGYS+
Sbjct: 781  GARMSPEDLKKWYVRNSQGAMVPFSAFAKGEWIYGSPKLARYNGVEAVEILGSPAPGYST 840

Query: 839  GQAMAEVERIAEQLPPGVGISFTGLSYEERLSGSQAPALYALSILVVFLCLAALYESWSI 898
            G+AMAEVE +A++LP GVGIS+TGLSYEERLSGSQAPALYALS+L+VFLCLAALYESWSI
Sbjct: 841  GEAMAEVEALAQKLPAGVGISWTGLSYEERLSGSQAPALYALSLLMVFLCLAALYESWSI 900

Query: 899  PIAVILVVPLGVIGALMATALRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKELNEKGQ 958
            PIAV+LVVPLG+IGAL+AT+LRGLSNDV+FQVGLL T+GLAAKNAILIVEFAKEL+E+G+
Sbjct: 901  PIAVMLVVPLGIIGALLATSLRGLSNDVYFQVGLLTTIGLAAKNAILIVEFAKELHEQGR 960

Query: 959  PLLEATVEACRMRLRPIVMTSLAFILGVLPLTISSGAGSGSQHAIGTGVIGGMITATVLA 1018
             L +A +EACRMRLRPI+MTSLAF+LGV+PL IS+GAGSGSQHAIGTGVIGGM+TATVLA
Sbjct: 961  SLSDAAIEACRMRLRPIIMTSLAFVLGVVPLAISTGAGSGSQHAIGTGVIGGMLTATVLA 1020

Query: 1019 IFWVPLFFVSISTLFKGSRKKRDETAMR--EEAGQ 1051
            IFWVPLFFV++S++ +     +D+ A+   +EAGQ
Sbjct: 1021 IFWVPLFFVTVSSMGQRKTADQDDVAIETSKEAGQ 1055