Pairwise Alignments

Query, 831 a.a., FIG005548: transport protein from Pseudomonas fluorescens FW300-N2E2

Subject, 889 a.a., hypothetical protein (NCBI) from Rhodospirillum rubrum S1H

 Score = 53.5 bits (127), Expect = 5e-11
 Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 11/162 (6%)

Query: 627 IEAATNIVVKSVQLEMLLAVYFAVALLCLMTFRSWRAVVVALLPLVLTSLLAEALMVQLN 686
           IEA   ++   V+   + AV  A+ L   ++ RS RAVV+   P++L   L     V   
Sbjct: 725 IEAGRTVMGAFVEAAAISAVLIAIMLA--ISLRSGRAVVLIFAPVILAGTLTIGASVLAG 782

Query: 687 IGLKVATLPVVALGVGVGVDYALYLLSVQLEGQRMGLSLQQAYRRAIQFTG-KMVALVGV 745
                A + V+ L VG+GV   +Y++    E +  G +L  +  RA+ F+    +A  G 
Sbjct: 783 QAFNFANVIVLPLLVGLGVSGGIYVVERTREERDSGTALASSTPRAVMFSAFTTIASFG- 841

Query: 746 TLAVGVVTWVGSPIKFQADMGILLAFMFLWNMLAALVLIPAL 787
             ++ + +  G+     A MGILL      ++L  L  +PAL
Sbjct: 842 --SIALSSHPGT-----ASMGILLTIALGLSLLCTLAFLPAL 876



 Score = 34.7 bits (78), Expect = 2e-05
 Identities = 73/337 (21%), Positives = 124/337 (36%), Gaps = 35/337 (10%)

Query: 146 EGFVGGPVMPGNFDGSPETIEQLRLNIARAGVVGS--LISTDYHSSMIEIPLLATVDGQP 203
           EGF   P++    + +  T      ++A + V+G+  +  T     ++  P+L       
Sbjct: 193 EGFALAPILDAMAEVTAATARGTSAHMAWSSVLGAPAVTGTPGRRFVLVKPVL-----DH 247

Query: 204 LSYQDLSEALERIRVKYEGADLG------IYITGFAKISGDMIDGIYKVM-LFFIVAALV 256
            S    + A+  IR   E  DL       + ITG A +  + +  +   M    +V  ++
Sbjct: 248 SSLAPAAGAMNAIRAVAESRDLRAAAGITLRITGPAALDQEELASVSTGMDRAGLVTTVL 307

Query: 257 AALIIYFHTRCVRSTALVLLCSVIAVLWQQGLVIAFGGVLD----AFTILIPFLIFAIGV 312
            A+I+       R     L+     +L   G   A  G L+    AF +L   L    G+
Sbjct: 308 VAIILAVGLGSGRLIFATLMTMGAGLLMTIGFAAAAVGTLNLISVAFAVLFIGLSVDFGI 367

Query: 313 SHGLQKMNGIAQDIARGTHPWVAARYTFRRLFLPGLIALIADGVGFAVLVLVDIPIIREL 372
             GL+   G  + +  G     AAR   R  FL  L A  A    F   +  D   + +L
Sbjct: 368 HFGLRYREGRDRGLENGLALEGAARGAGRSQFLVALAAAFA----FFAFLPTDYLGLAQL 423

Query: 373 ALSASLGFAMLVVTNLILLPVLLSFTGISQEAARRHIIEHDTTIHKLGIDRVWNSLDRFT 432
            L + +G  + ++ N   L  L++          R               R  + L +  
Sbjct: 424 GLISGVGMFIALLINQSTLASLMTLMPAKPRGNWR------------SESRPTSGLAQVP 471

Query: 433 ERR-WAVLAIAVALGLTVLALVERSKLQVGDLHAGSP 468
            R    VL + V L +  LAL+ R++     L+   P
Sbjct: 472 RRHPRVVLGLFVVLAIGALALLPRARFDFDPLNLKDP 508



 Score = 30.4 bits (67), Expect = 5e-04
 Identities = 43/174 (24%), Positives = 77/174 (44%), Gaps = 19/174 (10%)

Query: 620 LAAGSAGIEAATNIVVKSVQLEMLLAVYFAVALLCLMTFRSWRAVVVALLPLVLTSLLAE 679
           LA+ S G++ A   +V +V + ++LAV      L   T  +  A       L++T   A 
Sbjct: 290 LASVSTGMDRAG--LVTTVLVAIILAVGLGSGRLIFATLMTMGA------GLLMTIGFAA 341

Query: 680 ALMVQLNIGLKVATLPVVALGVGVGVDYALYLLSVQLEGQRMGLSLQQAYRRAIQFTGKM 739
           A +  LN+      +  + L V  G+ + L     +  G   GL+L+ A R A    G+ 
Sbjct: 342 AAVGTLNLISVAFAVLFIGLSVDFGIHFGLRYREGRDRGLENGLALEGAARGA----GRS 397

Query: 740 VALVGVTLAVGVVTWVGSPIKFQADMGIL------LAFMFLWNMLAALV-LIPA 786
             LV +  A     ++ +     A +G++      +A +   + LA+L+ L+PA
Sbjct: 398 QFLVALAAAFAFFAFLPTDYLGLAQLGLISGVGMFIALLINQSTLASLMTLMPA 451