Pairwise Alignments

Query, 372 a.a., Methyl-accepting chemotaxis protein from Pseudomonas fluorescens FW300-N2E2

Subject, 564 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  101 bits (251), Expect = 6e-26
 Identities = 77/258 (29%), Positives = 136/258 (52%), Gaps = 24/258 (9%)

Query: 77  SHQIDAARILSEESILKLSSRFATLSGDISASASHGADQSSGARLLEILEVGQRDLDSIM 136
           SH++D   + +++ +  ++   AT + +++++    A     A     + V Q++++  +
Sbjct: 311 SHKMDGHCLETDKVVAAVTEMSAT-AREVASNTYSTAQAIESAN--SQIAVAQKEVNLAI 367

Query: 137 VALRDALLRKESQLKEVMLLSDFTSQLQEMAKFVGDIAQQTNLLALNAAIEAARAGDAGR 196
             + + +         V  LS   +++ ++ K +GDIA+QTNLLALNAAIEAARAG+ GR
Sbjct: 368 DGIGELVNEVNQTSAAVGDLSQQAAKITQVLKVIGDIAEQTNLLALNAAIEAARAGEQGR 427

Query: 197 GFAVVADEVRKLSSLSGGTGQKISETVNAVNAAISRTVELSQHQAQQDSQTLAHSEQL-- 254
           GFAVVADEVR L+S +  + ++I E +NA++  +S+ V+      ++  +T   S Q+  
Sbjct: 428 GFAVVADEVRSLASRTQNSTKEIGEMLNALHQGVSKAVQSMNISQERGEKTALESVQIKE 487

Query: 255 ----VSQVIEHFRHNAQAIVDTSSSLQQQSENVATEISGVLVALQ-----------FQDR 299
               +S+ +          + T+S+ +QQS  VA +I+  LVA+Q             + 
Sbjct: 488 SLAGISKAVSLIHDMG---IQTASAAEQQSA-VAEDINQNLVAIQQIVNELSESFKQTES 543

Query: 300 VGQMLSLVNNDLGKLHGH 317
           V   LS     +G L GH
Sbjct: 544 VSASLSHSGQQMGTLVGH 561



 Score = 26.6 bits (57), Expect = 0.002
 Identities = 31/150 (20%), Positives = 67/150 (44%), Gaps = 11/150 (7%)

Query: 122 LEILEVGQRDLDSIMVA--LRDALLRKESQLKEVMLLSDFTSQLQEMAKFVGDIAQQTNL 179
           +E    G++     +VA  +R    R ++  KE+  + +   Q    A    +I+Q+   
Sbjct: 417 IEAARAGEQGRGFAVVADEVRSLASRTQNSTKEIGEMLNALHQGVSKAVQSMNISQERGE 476

Query: 180 LALNAAIEAARAGDAGRGFAVVADEVRKLSSLSGGTGQK---ISETVNAVNAAISRTV-E 235
                A+E+ +  ++  G +     +  +   +    ++   ++E +N    AI + V E
Sbjct: 477 ---KTALESVQIKESLAGISKAVSLIHDMGIQTASAAEQQSAVAEDINQNLVAIQQIVNE 533

Query: 236 LSQH--QAQQDSQTLAHSEQLVSQVIEHFR 263
           LS+   Q +  S +L+HS Q +  ++ HF+
Sbjct: 534 LSESFKQTESVSASLSHSGQQMGTLVGHFK 563