Pairwise Alignments

Query, 640 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas fluorescens FW300-N2E2

Subject, 635 a.a., Fis family transcriptional regulator from Pseudomonas fluorescens FW300-N2C3

 Score =  437 bits (1124), Expect = e-127
 Identities = 259/615 (42%), Positives = 374/615 (60%), Gaps = 16/615 (2%)

Query: 29  DRVIAQSWYRSVIKHRLDPSSSARLDVLCAEDIRQHQQRHQQYLDIASQGVSGLARRVVP 88
           D  IA+SW R +  + LDP+ +    VL    + + ++R QQ L IA   ++ L +++  
Sbjct: 29  DPSIARSWLRCLEDYHLDPAQNLAPTVLEHGRVLESRERLQQVLHIAGNEMTSLHQQLSG 88

Query: 89  AGFAVLLSDEHGITLDA-RLPDQPVPYVRSGLVVGARWDESIAGTNGIGTTLAAAEPLII 147
           AG AVLL+D  G+ L+    P +   + R+GL +GA W E+  GTNGIGT L   + L I
Sbjct: 89  AGHAVLLTDARGVILNCVTAPSERKIFERAGLWLGADWSEACEGTNGIGTCLVERQALTI 148

Query: 148 HREEHFLTSNARLSCSVAPIFNAQGLLQGCLNATCLNSNGPKESQYLTLQLVILYARLIE 207
           H+EEHF   +  L+CS +P+F+ QG L   L+ +    +  ++SQ+ T+ LV L A++IE
Sbjct: 149 HQEEHFRGRHTGLTCSASPVFDPQGELLAVLDVSSARPDVSRQSQFHTMALVNLSAKMIE 208

Query: 208 NAHFRQNYRDRLTLSLKPIDEIADLANEQLLALDDSGRVIGANHAAFVAHDQAHGPHLLG 267
           + +F + + ++  L      E   L +E LLA D  GR+   N +A        G  LLG
Sbjct: 209 SCYFLRCFDNQWLLRFHLQAESVGLFSEGLLAFDGEGRICAVNQSALNLLGHIRGG-LLG 267

Query: 268 GPIEQLLPMGVNELL-RLTNGGARGLRLRARHDEALLDLSLRIPSS-DHRLAPAPAKAQR 325
             +E      ++ELL R +   +    LR R    L  +    P S    +APA  KA  
Sbjct: 268 QRVEDFFDCSLDELLGRASAQASASWPLRTRDGRHLFAVLRGQPRSVPVPVAPALLKAIE 327

Query: 326 PRHPDLEQLAGDDPTLQQAVRRLHKVIDKDIAILITGETGTGKEAFARAIHQASARRDEP 385
           P    L  +   D  LQ+  R+  +V ++D+ +LI GETG+GKEAFA+A+H AS R  + 
Sbjct: 328 PTR--LPGICLGDAALQEHFRKALRVFERDVPLLIHGETGSGKEAFAKAVHHASQRAGKH 385

Query: 386 FIALNCAAIPESLIESELFGYRGGSFTGADKKGMKGKLELANGGTLFLDEIGDMPAHLQT 445
           F+ALNCAAIPESLIESELFGYRGGSFTGA K+GM+GKL+ A+GGTLFLDEIGDMP  LQT
Sbjct: 386 FVALNCAAIPESLIESELFGYRGGSFTGARKEGMRGKLQQADGGTLFLDEIGDMPLALQT 445

Query: 446 RLLRVLAEREISPIGAPMPVSLDIQVICATHQDLQGMLRDKHFREDLFYRLNGMNLSLPP 505
           RLLRVL +R++ PIG   P ++++++I ATH+ L   +RD  FREDL+YRLNG+ + LPP
Sbjct: 446 RLLRVLEDRQVVPIGGE-PEAVNVRIISATHRQLLDRVRDGSFREDLYYRLNGLEIPLPP 504

Query: 506 LRERSDRAQLIQRLLDSQAEAKGVQLTAQARQCLLEASWPGNIRQLINALRYAVAMAEDG 565
           LRERSD++QL+  LL  ++ A+ V +   ARQ LL   WPGN+RQL N LR   A+ + G
Sbjct: 505 LRERSDKSQLLDFLLAEESGAETVLIEEPARQALLGFDWPGNVRQLRNVLRTLAALCDGG 564

Query: 566 NVDVDCLPAELLQGDAYARLASPSVGSEPPASN-----LLEILRRHRWNISAAAAELGVA 620
            + ++ LPA + Q      +A     +E P  +     LL+ L R RW+++  A +LG++
Sbjct: 565 RIGLEDLPAMIRQ----RPVAVVETVAERPLEDAERLVLLDALERQRWHMTHTAEQLGIS 620

Query: 621 RSTLYRQMKKQRLVQ 635
           R+TLYR+++K  + +
Sbjct: 621 RNTLYRKLRKHAIAR 635