Pairwise Alignments

Query, 640 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas fluorescens FW300-N2E2

Subject, 603 a.a., sigma-54-dependent Fis family transcriptional regulator from Pseudomonas fluorescens SBW25-INTG

 Score =  315 bits (808), Expect = 3e-90
 Identities = 219/610 (35%), Positives = 330/610 (54%), Gaps = 23/610 (3%)

Query: 29  DRVIAQSWYRSVIKHRLDPSSSARLDVLCAEDIRQHQQRHQQYLDIASQGVSGLARRVVP 88
           D +I +SW R      LD  S+   D L AE I Q  +     +    Q V      ++ 
Sbjct: 8   DTLIQESW-RRCRAFGLDHQSTPSFDQLPAEGISQLLESQHSLVQTTHQEVLPYYENILS 66

Query: 89  -AGFAVLLSDEHGITLDARLPDQPV-PYVRSGLVVGARWDESIAGTNGIGTTLAAAEPLI 146
            +   ++L+D  G  L +    + + P +  G   GA W E  +GTN IGT LA A+ + 
Sbjct: 67  NSNCLIMLADNQGQVLTSWGTQRFIEPKLARGFNPGASWRERSSGTNAIGTALACAQAVH 126

Query: 147 IHREEHFLTSNARLSCSVAPIFNAQGLLQGCLNATCLNSNGPKESQYLTLQLVILYARLI 206
           I  +EHFL +N  ++ S APIF+AQ  +   L+ +  +   P      TL +V + ++ +
Sbjct: 127 IEHDEHFLKANRFMTGSAAPIFDAQREIIAVLDVSSDSYLPPSH----TLGMVKMMSQTV 182

Query: 207 ENAHFRQNYR-DRLTLSLKPIDEIADLANEQLLALDDSGRVIGANHAAFVAHDQAHGPHL 265
           EN      +R +   L+        D     LL  D+SG+V+ AN  A    D   G  L
Sbjct: 183 ENRLILNLFRGEHFQLTFNTGLSNLDSQWAGLLIFDESGQVLSANRRA----DNLLGISL 238

Query: 266 LGGPIEQLLPMGVNELLRLTNGGARGLRLRARHD-EALLDLSLRIPSSDHRLA-PAPAKA 323
               I+ L  + + ELL    G    L+   R+  + LL    ++P        P P K 
Sbjct: 239 SRVMIDSLFKVSLLELLNQPEGLPFSLQAAGRNRFQCLLRRPKQVPVQARVFTEPTPPK- 297

Query: 324 QRPRHPDLEQLAGDDPTLQQAVRRLHKVIDKDIAILITGETGTGKEAFARAIHQASARRD 383
             P    L+ L   D  +++AVR+  ++++KDI +LI GETG GKE F +A+HQAS+R  
Sbjct: 298 --PASIGLKTLHFGDVRVEKAVRQAERLLEKDIPLLIHGETGVGKEVFVKALHQASSRSQ 355

Query: 384 EPFIALNCAAIPESLIESELFGYRGGSFTGADKKGMKGKLELANGGTLFLDEIGDMPAHL 443
           + FIA+NCAAIP  L+ESELFGY  G+FTGA++KG  G +  A+ GTLFLDEIGDMP   
Sbjct: 356 KAFIAVNCAAIPAELVESELFGYEKGAFTGANQKGSIGLIRKADKGTLFLDEIGDMPLPT 415

Query: 444 QTRLLRVLAEREISPIGAPMPVSLDIQVICATHQDLQGMLRDKHFREDLFYRLNGMNLSL 503
           Q RLLRVL ER + P+G+     +D+++I AT++ L+ +++   FREDL+YR+ G+ L L
Sbjct: 416 QARLLRVLQERCVQPVGSSELFPVDLRIISATNRALRELVQAGRFREDLYYRIGGLTLEL 475

Query: 504 PPLRERSDRAQLIQRLLDSQAE-AKGVQLTAQARQCLLEASWPGNIRQLINALRYAVAMA 562
           PPLRER+D+  L Q+L     E  +   L+A+      +  WPGN+RQ+ + L+ A+AMA
Sbjct: 476 PPLRERTDKRALFQQLWQQHREPTQWAGLSAEVLALFEQHPWPGNLRQVSSVLQVALAMA 535

Query: 563 EDGNVDVDCLPAELLQGDAYARLASPSVGSE--PPASNLLEILRRHRWNISAAAAELGVA 620
           E+  +  + LP +         + SP   SE    + +L + L+    NIS  A ELGV+
Sbjct: 536 EEQPIRPEHLPDDFF---VDLNVESPLPASEYLDASIDLNQRLKAVGGNISHLARELGVS 592

Query: 621 RSTLYRQMKK 630
           R+TLY+++++
Sbjct: 593 RNTLYKRLRQ 602