Pairwise Alignments

Query, 1031 a.a., RND efflux system, inner membrane transporter CmeB from Pseudomonas fluorescens FW300-N2E2

Subject, 1047 a.a., Hydrophobe/amphiphile efflux-1 HAE1 from Pseudomonas syringae pv. syringae B728a

 Score = 1249 bits (3231), Expect = 0.0
 Identities = 652/1031 (63%), Positives = 785/1031 (76%), Gaps = 5/1031 (0%)

Query: 1    MPQFFIDRPVFAWVVALFILLAGILAIPQLPVAQYPVVAPPQIEIYTVYPGASAQTVDES 60
            M  FFI RP FAWV+ALFILLAG++A+P LPVAQYP VAPPQI I   YPGASA+ + +S
Sbjct: 1    MSLFFIKRPNFAWVLALFILLAGLMALPSLPVAQYPDVAPPQITITATYPGASAKVLVDS 60

Query: 61   VVSLIEEELNGADNLLYFESQS-SLGSATITATFQPGTNPELAQVDVQNRLKAVESRLPQ 119
            V S+IE+ELNGA  +LY+ES S S GSA I  TF PGTNP+LAQV+VQNR+K  E+RLPQ
Sbjct: 61   VTSVIEDELNGAKGMLYYESTSNSTGSAEINVTFVPGTNPDLAQVEVQNRIKKAEARLPQ 120

Query: 120  AVTQQGLQVDKVSAGFLLLITLTSSDGKL--DDVALSDYLARNVMNEIKRLDGVGKAQLY 177
             V  QGLQV++ S+GFLL+ TL   DG    D VAL+DY ARNV NEI R++GVG+ Q +
Sbjct: 121  TVLSQGLQVEQASSGFLLIYTLNYKDGAASKDTVALADYAARNVNNEISRVNGVGRLQFF 180

Query: 178  GAERAMRIWIDPQKLVGFNLTPADVNAAIVAQNAQVSAGSLGDLPSRHTQEITATIVVKG 237
             AE AMR+WIDPQKLVGF L+  DVNAAI AQN QV AGS G  P+   QE+TAT+ VKG
Sbjct: 181  AAEAAMRVWIDPQKLVGFGLSIDDVNAAIRAQNVQVPAGSFGSSPASSLQELTATLAVKG 240

Query: 238  QLNTPQEFADIVLKANPDGSTVRIADVARVEIGSQEYQFSTRLNGKPSTAVAVQLSPGAN 297
             L+ P+EF  IVL+AN DGS V ++DVARV +GSQ+Y F +RLNG+ + A AVQLSPGAN
Sbjct: 241  TLDNPEEFGRIVLRANEDGSAVHLSDVARVAVGSQDYSFESRLNGQRAVAGAVQLSPGAN 300

Query: 298  ALNTATLVRNKMDELSHYFPAGVEYKIPYDTSPFVKVSITKVIYTLGEAMLLVFAVMFLF 357
            A+ TA  V  ++ ELS  FP GV + IPYDTS FV V+I KVIYTL EAM+LVF VMFLF
Sbjct: 301  AIQTARAVEQRLTELSVNFPEGVGFSIPYDTSRFVDVAIDKVIYTLIEAMVLVFLVMFLF 360

Query: 358  LQNIRYTLIPTLVVPVALMGTFATMLALGFSINVLTMFGMVLAIGILVDDAIVVVENVER 417
            LQNIRYTLIPT+VVPV L GT A M  +GFS+N++TMFGMVLAIGILVDDAIVVVENVER
Sbjct: 361  LQNIRYTLIPTIVVPVCLAGTLAIMYLMGFSVNMMTMFGMVLAIGILVDDAIVVVENVER 420

Query: 418  IMAREGLSPKEATRKAMGQITGAIIGITLVLVAVFIPMAFMHGSVGVIYQQFSLSMATSI 477
            IMA EGLSP  AT KAM Q++GAI GITLVL AVF+P+AFM GSVGVIYQQFSLS+A SI
Sbjct: 421  IMAEEGLSPAAATVKAMQQVSGAIFGITLVLAAVFLPLAFMGGSVGVIYQQFSLSLAVSI 480

Query: 478  LFSAFLALTLTPALCATLLKPLAQGDHHAKTGFFGMFNRGFDRFGERYQGWVAYAVKRSG 537
            LFS FLALT TPALCATLLKP+  G HH K GFFG FNR F +F  RY+   +  +KR+G
Sbjct: 481  LFSGFLALTFTPALCATLLKPIPAG-HHEKRGFFGGFNRLFGKFTHRYERVSSSMIKRAG 539

Query: 538  RYLLIYGVLLVGMGVLFSRLPSSFLPVEDQGYTITDIQLPPGASKNRTVQVVEQIEAHNA 597
            RY+L+Y  ++  +G  + RLP SF+PVEDQGY I D+QLPPGA+++RT    + +E +  
Sbjct: 540  RYMLLYVGIVGLLGFFYLRLPESFVPVEDQGYLIIDVQLPPGATRSRTDLTAQLLENYML 599

Query: 598  GEPGVGDSTIILGFSFSGSGQNAALAFTTLKDWSQRGAEDSAASIADRANLALGQIKDAM 657
                 G  T++LGFSFSG G+NA LAF TLKDWS+R    SAA  A   N     + D  
Sbjct: 600  SREATGAVTMLLGFSFSGMGENAGLAFPTLKDWSERAKGQSAAEEAVAFNQHFAGLGDGT 659

Query: 658  AFSVLPPPVDGLGTSSGFEFRLQDRGGLGHATLMQARSELLAAADKSPMLMNVRESALAE 717
              +V PPP+DGLGTS GF  RLQDR GLG   L+ AR +LL  A+ +P ++      LAE
Sbjct: 660  VMAVTPPPIDGLGTSGGFSLRLQDRAGLGREALLAARDKLLGEANGNPKILYAMMEGLAE 719

Query: 718  APQVQLEVDRKQANALGISFADVGSVLSTAVGSAYINDFPNQGRMQRVVVQAEGDQRSQV 777
            APQ++L +DR++A ALG+SF  + + LSTA GS+ I+DF N GR QRVVVQAE   R   
Sbjct: 720  APQLRLSIDREKARALGVSFESINNALSTAFGSSVISDFANAGRQQRVVVQAEQSARMTP 779

Query: 778  EDLLKIHVRNNSGKMVPLSAFVQARWTQGPAQLTRYNGYPAVSISGEPAPGYSTGQAMAE 837
            E +LK++V N+SG +VPL AFV   W QGP Q+ RYNGYPA  ISG+ APG STG+AMAE
Sbjct: 780  ESVLKLYVPNSSGTLVPLGAFVSTHWEQGPVQIARYNGYPAFRISGDAAPGVSTGEAMAE 839

Query: 838  IERLVALGPTGLGQEWTGLSLQERLSGSQAPILLGLSLLVVFLCLAALYESWSIPTSVLL 897
            IER+V+  P G+G EWTGLS QER++  QA  L GL+LLVVFL L ALYESW+IP  V+L
Sbjct: 840  IERIVSKLPQGIGYEWTGLSYQERVASGQAAGLFGLALLVVFLLLVALYESWAIPLVVML 899

Query: 898  VVPLGVLGAVLAVSLRGMPNDVFFKIGLITIIGLSAKNAILIIEFAKSLYDEGHDLIDAT 957
            +VP+G LG+VLAV+  GMPNDV+FK+GLITIIGL+AKNAILI+EFAK L+D+GH L DA 
Sbjct: 900  IVPVGALGSVLAVTAVGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELWDQGHSLRDAA 959

Query: 958  LQAARLRLRPIIMTSLAFILGVVPLAIATGASSASQQAIGTGVIGGMITAT-LAVVFVPV 1016
            LQAARLR RPI+MTSLAFILGVVPL +ATGA +ASQ+AIGTGVIGGM++AT L VV VP+
Sbjct: 960  LQAARLRFRPIVMTSLAFILGVVPLTLATGAGAASQRAIGTGVIGGMLSATLLGVVLVPI 1019

Query: 1017 FFVVVMKRVRR 1027
            FFV V+  +RR
Sbjct: 1020 FFVWVLSVLRR 1030