Pairwise Alignments

Query, 1031 a.a., RND efflux system, inner membrane transporter CmeB from Pseudomonas fluorescens FW300-N2E2

Subject, 1030 a.a., multidrug efflux RND transporter permease subunit from Pseudomonas fluorescens SBW25-INTG

 Score = 1768 bits (4580), Expect = 0.0
 Identities = 900/1027 (87%), Positives = 981/1027 (95%)

Query: 1    MPQFFIDRPVFAWVVALFILLAGILAIPQLPVAQYPVVAPPQIEIYTVYPGASAQTVDES 60
            MPQFFIDRP+FAWVVALFILLAG LAIPQLPVAQYP VAPP++EIY VYPGASAQT+DES
Sbjct: 1    MPQFFIDRPIFAWVVALFILLAGALAIPQLPVAQYPNVAPPKVEIYAVYPGASAQTLDES 60

Query: 61   VVSLIEEELNGADNLLYFESQSSLGSATITATFQPGTNPELAQVDVQNRLKAVESRLPQA 120
            VVSLIE+ELNGAD+LLYFESQSSLGSATITATFQPGTNPE+AQVDVQNRLKAVE RLPQA
Sbjct: 61   VVSLIEQELNGADHLLYFESQSSLGSATITATFQPGTNPEMAQVDVQNRLKAVEPRLPQA 120

Query: 121  VTQQGLQVDKVSAGFLLLITLTSSDGKLDDVALSDYLARNVMNEIKRLDGVGKAQLYGAE 180
            VTQQGLQV+KVSAGFLLL+TLTS+DGKLDDVALSDYLARNVMNE+KRLDGVGKAQLYGAE
Sbjct: 121  VTQQGLQVEKVSAGFLLLVTLTSNDGKLDDVALSDYLARNVMNELKRLDGVGKAQLYGAE 180

Query: 181  RAMRIWIDPQKLVGFNLTPADVNAAIVAQNAQVSAGSLGDLPSRHTQEITATIVVKGQLN 240
            RAMRIWIDPQKL+GFNLTPADVNAAI AQNAQVSAGS+GDLP  ++QEITA ++VKGQL+
Sbjct: 181  RAMRIWIDPQKLIGFNLTPADVNAAISAQNAQVSAGSIGDLPGTNSQEITAAVLVKGQLS 240

Query: 241  TPQEFADIVLKANPDGSTVRIADVARVEIGSQEYQFSTRLNGKPSTAVAVQLSPGANALN 300
            TP EFADIVLKANPDGSTVRI DVARVE+GSQEYQFSTRLNGKPSTAV+VQLSPGANALN
Sbjct: 241  TPAEFADIVLKANPDGSTVRIGDVARVEVGSQEYQFSTRLNGKPSTAVSVQLSPGANALN 300

Query: 301  TATLVRNKMDELSHYFPAGVEYKIPYDTSPFVKVSITKVIYTLGEAMLLVFAVMFLFLQN 360
            TAT VR KMDELS +FPA VEYKIPYDTSPFVKVSITKV+YTL EAM LVFAVMFLFLQN
Sbjct: 301  TATRVRAKMDELSRFFPANVEYKIPYDTSPFVKVSITKVVYTLLEAMALVFAVMFLFLQN 360

Query: 361  IRYTLIPTLVVPVALMGTFATMLALGFSINVLTMFGMVLAIGILVDDAIVVVENVERIMA 420
            +RYTLIPTLVVP+ALMGTFATML LGFSINVLTMFGMVLAIGILVDDAIVVVENVERIMA
Sbjct: 361  VRYTLIPTLVVPIALMGTFATMLLLGFSINVLTMFGMVLAIGILVDDAIVVVENVERIMA 420

Query: 421  REGLSPKEATRKAMGQITGAIIGITLVLVAVFIPMAFMHGSVGVIYQQFSLSMATSILFS 480
             EGLSPK+AT+KAMGQITGAI+GITLVLVAVF+PM FM GSVGVIYQQFSLSMATSILFS
Sbjct: 421  TEGLSPKDATKKAMGQITGAIVGITLVLVAVFLPMGFMAGSVGVIYQQFSLSMATSILFS 480

Query: 481  AFLALTLTPALCATLLKPLAQGDHHAKTGFFGMFNRGFDRFGERYQGWVAYAVKRSGRYL 540
            AFLALTLTPALCATLLKP+A+G+HHAK GFFG FN+ F++  +RY+GWVAYA+KRSGRYL
Sbjct: 481  AFLALTLTPALCATLLKPIAKGEHHAKGGFFGGFNKRFEQLTDRYEGWVAYALKRSGRYL 540

Query: 541  LIYGVLLVGMGVLFSRLPSSFLPVEDQGYTITDIQLPPGASKNRTVQVVEQIEAHNAGEP 600
            LIY +LLVG+G +FSRLPSSFLPVEDQGYTITDIQLPPGASKNRTVQV EQIEAHNAGEP
Sbjct: 541  LIYLMLLVGLGWMFSRLPSSFLPVEDQGYTITDIQLPPGASKNRTVQVAEQIEAHNAGEP 600

Query: 601  GVGDSTIILGFSFSGSGQNAALAFTTLKDWSQRGAEDSAASIADRANLALGQIKDAMAFS 660
            GVGD+T+I+GFSFSGSGQNAALAFTTLKDWS+R ++DSA+SIADRAN+A  ++KDA+A++
Sbjct: 601  GVGDTTMIMGFSFSGSGQNAALAFTTLKDWSERSSDDSASSIADRANMAFSELKDAIAYA 660

Query: 661  VLPPPVDGLGTSSGFEFRLQDRGGLGHATLMQARSELLAAADKSPMLMNVRESALAEAPQ 720
            +LPPPVDGLGTSSGFEFRLQDRGG+GHA LM AR+ELLAAA KSP+L NVRESALAEAPQ
Sbjct: 661  ILPPPVDGLGTSSGFEFRLQDRGGVGHAALMAARTELLAAAAKSPILANVRESALAEAPQ 720

Query: 721  VQLEVDRKQANALGISFADVGSVLSTAVGSAYINDFPNQGRMQRVVVQAEGDQRSQVEDL 780
            VQLEVDRKQANALG+SFADVG+VLS+A+GSAYINDFPNQGRMQRVVVQAEGDQRSQV DL
Sbjct: 721  VQLEVDRKQANALGVSFADVGNVLSSAIGSAYINDFPNQGRMQRVVVQAEGDQRSQVADL 780

Query: 781  LKIHVRNNSGKMVPLSAFVQARWTQGPAQLTRYNGYPAVSISGEPAPGYSTGQAMAEIER 840
            +KI+VRNN+GKMVPLSAFV+A+WTQGP QLTRYNGYPA++ISGE APG+STG+AM EI+R
Sbjct: 781  MKINVRNNAGKMVPLSAFVEAKWTQGPTQLTRYNGYPAIAISGEAAPGHSTGEAMDEIQR 840

Query: 841  LVALGPTGLGQEWTGLSLQERLSGSQAPILLGLSLLVVFLCLAALYESWSIPTSVLLVVP 900
            LV+  P GLGQEWTGLSLQERLSG+QAP+LLGLSLL+VFLCLAALYESWSIPTSVLLVVP
Sbjct: 841  LVSQLPAGLGQEWTGLSLQERLSGAQAPLLLGLSLLIVFLCLAALYESWSIPTSVLLVVP 900

Query: 901  LGVLGAVLAVSLRGMPNDVFFKIGLITIIGLSAKNAILIIEFAKSLYDEGHDLIDATLQA 960
            LGVLGAV+AVSLRGMPNDVFFK+GLITIIGLSAKNAILIIEFAK LYD+G DLI ATL+A
Sbjct: 901  LGVLGAVVAVSLRGMPNDVFFKVGLITIIGLSAKNAILIIEFAKDLYDQGEDLITATLKA 960

Query: 961  ARLRLRPIIMTSLAFILGVVPLAIATGASSASQQAIGTGVIGGMITATLAVVFVPVFFVV 1020
            ARLRLRPIIMTSLAFILGVVPLAIATGASSASQQAIGTGVIGGMITATLAVVFVPVFFVV
Sbjct: 961  ARLRLRPIIMTSLAFILGVVPLAIATGASSASQQAIGTGVIGGMITATLAVVFVPVFFVV 1020

Query: 1021 VMKRVRR 1027
            VMK V++
Sbjct: 1021 VMKLVKK 1027