Pairwise Alignments

Query, 1031 a.a., RND efflux system, inner membrane transporter CmeB from Pseudomonas fluorescens FW300-N2E2

Subject, 1046 a.a., hydrophobe/amphiphile efflux-1 (HAE1) family transporter from Dechlorosoma suillum PS

 Score = 1206 bits (3119), Expect = 0.0
 Identities = 617/1034 (59%), Positives = 786/1034 (76%), Gaps = 12/1034 (1%)

Query: 1    MPQFFIDRPVFAWVVALFILLAGILAIPQLPVAQYPVVAPPQIEIYTVYPGASAQTVDES 60
            +P FF+ RP+FAWV+ALFI+L G++AIPQLP+A+YP VAPP + IY VYPGA+ QT++++
Sbjct: 3    LPAFFVRRPIFAWVIALFIILLGLIAIPQLPIARYPTVAPPMVSIYAVYPGATPQTMNDA 62

Query: 61   VVSLIEEELNGADNLLYFESQSSL-GSATITATFQPGTNPELAQVDVQNRLKAVESRLPQ 119
            VV LIE EL+   NLLYFES +   G A ITATF+PGTNPELAQVDVQNR+K VE RLP 
Sbjct: 63   VVGLIERELSSVKNLLYFESSTDTSGFAQITATFKPGTNPELAQVDVQNRIKTVEPRLPA 122

Query: 120  AVTQQGLQVDKVSAGFLLLITLTSSDGKLDDVALSDYLARNVMNEIKRLDGVGKAQLYGA 179
             V Q GL+ +  ++ FL+ I+L S DG+  +VAL+DY+AR+++ E++R+DGVG+ QL+G+
Sbjct: 123  VVRQNGLKFESAASSFLMFISLKSDDGRHSEVALNDYMARSMVEELRRVDGVGRVQLFGS 182

Query: 180  ERAMRIWIDPQKLVGFNLTPADVNAAIVAQNAQVSAGSLGDLPSRHTQEITATIVVKGQL 239
            E AMRIW+DP KLV + L+ +D++ A+  QN Q++ G +G  P+   Q +T  + V+GQL
Sbjct: 183  EAAMRIWVDPAKLVAYKLSMSDLSDAVTQQNTQIAPGRVGGAPTVEGQRVTFPVSVQGQL 242

Query: 240  NTPQEFADIVLKANPDGSTVRIADVARVEIGSQEYQFSTRLNGKPSTAVAVQLSPGANAL 299
             TP++FA IVL+ANPDGS V + DVARV +G+Q Y  S R NGK + A+ VQ+SPGANA+
Sbjct: 243  TTPEQFAAIVLRANPDGSKVVLGDVARVALGAQSYGESNRENGKLAAALGVQMSPGANAV 302

Query: 300  NTATLVRNKMDELSHYFPAGVEYKIPYDTSPFVKVSITKVIYTLGEAMLLVFAVMFLFLQ 359
             T+  V+ ++ EL+   P G+ Y +P+DT+PFV++SI KV  TL EAMLLVF VM+LFLQ
Sbjct: 303  RTSAAVKARLAELAKTMPPGMSYSVPFDTAPFVQISIEKVAQTLLEAMLLVFLVMYLFLQ 362

Query: 360  NIRYTLIPTLVVPVALMGTFATMLALGFSINVLTMFGMVLAIGILVDDAIVVVENVERIM 419
            N+RYT IP +V P+AL+GTF  MLA GFS+NVLTMFGMVLAIGI+VDDAIVVVENVER+M
Sbjct: 363  NVRYTFIPAIVAPIALLGTFTVMLATGFSVNVLTMFGMVLAIGIIVDDAIVVVENVERLM 422

Query: 420  AREGLSPKEATRKAMGQITGAIIGITLVLVAVFIPMAFMHGSVGVIYQQFSLSMATSILF 479
            A EGLSP+EAT KAM +I+GA++GITLVL+AVFIPMA   GSVGVIY+QF+LSMA SILF
Sbjct: 423  ASEGLSPREATLKAMKEISGAVVGITLVLIAVFIPMALAGGSVGVIYRQFTLSMAVSILF 482

Query: 480  SAFLALTLTPALCATLLKPLAQGDHHAKTGFFGMFNRGFDRFGERYQGWVAYAVKRSGR- 538
            SAFLALTLTPALCATLLKP+  G HH K GFFG FNR F+R   RY+  V   V+RSGR 
Sbjct: 483  SAFLALTLTPALCATLLKPV-DGAHHEKGGFFGWFNRMFERMTGRYETRVVAMVRRSGRA 541

Query: 539  ---YLLIYGVLLVGMGVLFSRLPSSFLPVEDQGYTITDIQLPPGASKNRTVQVVEQIEAH 595
               +L I GVL +G    F +LPS+FLP EDQGY IT IQLP  A+  RT+ VV+  EAH
Sbjct: 542  MAVFLAITGVLALG----FWQLPSAFLPEEDQGYFITSIQLPSDATTERTLDVVKAFEAH 597

Query: 596  NAGEPGVGDSTIILGFSFSGSGQNAALAFTTLKDWSQRGAEDSAASIADRANLALGQIKD 655
              G PG+     +LG+ FSGSG NAA+ FTTLK+W +R    + A +   A  A+G  ++
Sbjct: 598  AVGRPGIEAVQAVLGWGFSGSGPNAAIIFTTLKEWHERQGATAPAEVM-AAQEAMGVARE 656

Query: 656  AMAFSVLPPPVDGLGTSSGFEFRLQDRGGLGHATLMQARSELLAAADKSPMLMNVRESAL 715
             M  +++PP ++ LGTSSGF  RLQDR   G+A LM A+ +LLA A +S ++  V    L
Sbjct: 657  GMVINLMPPAIEELGTSSGFSMRLQDRANQGYAALMAAQQQLLAMAAESKLVTGVYPEGL 716

Query: 716  AEAPQVQLEVDRKQANALGISFADVGSVLSTAVGSAYINDFPNQGRMQRVVVQAEGDQRS 775
                 V+L++DR++A ALG+SFA++   LSTA+GS Y+NDFPN GRMQ+V++QAE   R 
Sbjct: 717  PPGSSVRLDIDRQKAEALGVSFANISDTLSTAMGSLYVNDFPNAGRMQQVIIQAEARSRM 776

Query: 776  QVEDLLKIHVRNNSGKMVPLSAFVQARWTQGPAQLTRYNGYPAVSISGEPAPGYSTGQAM 835
            QVED+L++HVRNN+G MV LS  V  +W+  P QL RY GYPAV I+G  APG S+G+AM
Sbjct: 777  QVEDILRLHVRNNAGGMVALSEVVTPQWSDAPLQLVRYLGYPAVRIAGSAAPGASSGEAM 836

Query: 836  AEIERLVALGPTGLGQEWTGLSLQERLSGSQAPILLGLSLLVVFLCLAALYESWSIPTSV 895
            AE+ERL A  P G   EWTG SLQER S +QAP+L+ LS+LVVFL LAALYESW+IP +V
Sbjct: 837  AEMERLAAKLPPGFAVEWTGQSLQERQSAAQAPLLMALSMLVVFLVLAALYESWTIPLAV 896

Query: 896  LLVVPLGVLGAVLAVSLRGMPNDVFFKIGLITIIGLSAKNAILIIEFAKSLYDEGHDLID 955
            +LVVPLG++GAV AV  RGMPNDVFFK+G+IT+IGLSAKNAILIIEFAK L+++G  LI+
Sbjct: 897  MLVVPLGLIGAVFAVYARGMPNDVFFKVGMITVIGLSAKNAILIIEFAKQLHEQGMGLIE 956

Query: 956  ATLQAARLRLRPIIMTSLAFILGVVPLAIATGASSASQQAIGTGVIGGMITAT-LAVVFV 1014
            A   AARLRLRPI+MTSLAF LGVVPL +A+GAS+ +Q AIGTGV GGMITAT LAV  V
Sbjct: 957  AAAAAARLRLRPILMTSLAFALGVVPLMLASGASAETQHAIGTGVFGGMITATVLAVFLV 1016

Query: 1015 PVFFVVVMKRVRRV 1028
            PV+FV V+    R+
Sbjct: 1017 PVYFVFVLSLSERL 1030