Pairwise Alignments

Query, 790 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Pseudomonas fluorescens FW300-N2E2

Subject, 950 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  388 bits (996), Expect = e-112
 Identities = 197/430 (45%), Positives = 284/430 (66%)

Query: 351 ENVEYLAYHDGLTALPNRSLFSKLLSQSIGEASRYHRQLAVLFLDLDRFKQVNDTLGHDA 410
           E + YL ++D LT L NR LF + L ++     R  R +AVL++DLDRFK +N++LGH+A
Sbjct: 521 ERLRYLTHYDDLTGLANRGLFKERLHEACQRVRRNGRNMAVLYIDLDRFKLLNESLGHEA 580

Query: 411 GDQLLKEVALRLKACLRTSDTVARLGGDEFVILLPELSDDKDVATAAQKVLGAIARPFNL 470
            D LL+EV+ RL   L  +DT+ARL GDEFV+LL        +A    ++L  I +P  +
Sbjct: 581 ADALLREVSRRLSTTLAEADTIARLSGDEFVVLLDAYGSLSSLAHLGSRLLQRIRKPMVI 640

Query: 471 QGQEFRVTASVGISVFPQDGLDEQTLKKNADIAMYQAKQCGKNNFQFYSAKLNADSLERM 530
             QE  ++AS+G+S+ P +  D + L + A+IAM QAK  G N  QF++ +  A S+  +
Sbjct: 641 DEQELVISASIGVSLLPDNSRDAEALLRQANIAMQQAKHLGGNTLQFFTDRPQASSMHYL 700

Query: 531 TLELSLRHALERHEFQLHYQAKRDIGSGRITGMEALLRWNHPDLGIVAPMQFIPVAEETG 590
            LE  LR ALE  + ++ YQ +  +    +   EAL+RW HP+LG+VAP QFIP+AEETG
Sbjct: 701 QLENQLRKALEVGQLEVFYQPRLSLADDSLEAAEALVRWRHPELGLVAPAQFIPLAEETG 760

Query: 591 LIVPIGKWVLKTACQQNVAWQQQGLPCLGVAVNLTARQFADENLLTDLAGILAETGMDAR 650
           LI+P+G++VL+ AC+Q   WQQ GL  + V+VNL+ +Q    N ++ +  +L ETG+ A 
Sbjct: 761 LIIPLGEFVLREACRQARQWQQDGLAAIRVSVNLSVKQLRQGNFVSLVRQVLEETGLPAT 820

Query: 651 LLELEIAESLLMQDVKKALNVLTGLKHLKVRIAIDDFGIGYSSLSALEQFPLDVIKIDRS 710
           +LELE+ ES L+ D+  A+++   L+ L V++AIDDFG G+SSLS L++FP+D +KIDRS
Sbjct: 821 MLELELTESQLLDDIDNAISISEQLRALGVKLAIDDFGTGFSSLSYLKRFPVDYVKIDRS 880

Query: 711 CICDTSSVSEDKALTEAIIAMGRTLSLTVVAQGVETKEQADFLRDNACDEFQGFYFNKPV 770
            I +    S+D A+T AIIAM  +L   VVA+GVET+ Q DFL+ N CDE QG+  + PV
Sbjct: 881 FISELEHSSQDAAITRAIIAMVHSLERKVVAEGVETQAQMDFLKANHCDEIQGYLLSPPV 940

Query: 771 PADQFKVLLK 780
           PA QF  LL+
Sbjct: 941 PALQFAELLR 950