Pairwise Alignments

Query, 790 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Pseudomonas fluorescens FW300-N2E2

Subject, 889 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score =  418 bits (1074), Expect = e-121
 Identities = 215/420 (51%), Positives = 289/420 (68%)

Query: 353 VEYLAYHDGLTALPNRSLFSKLLSQSIGEASRYHRQLAVLFLDLDRFKQVNDTLGHDAGD 412
           + +LA HD LT LPNRSL S  ++ +I  +      +A+L LDLD FK +ND+LGH+ GD
Sbjct: 452 IRHLAEHDALTDLPNRSLLSSRMADAINRSVGSQAPMALLLLDLDHFKNINDSLGHEVGD 511

Query: 413 QLLKEVALRLKACLRTSDTVARLGGDEFVILLPELSDDKDVATAAQKVLGAIARPFNLQG 472
           +LL+  A RL+  L  +DT++R GGDEF ILL E S    +   AQ++L  +A+PFN+ G
Sbjct: 512 KLLQLAAERLRHTLDAADTLSRSGGDEFAILLTECSGAPMIGRIAQRLLETMAQPFNVDG 571

Query: 473 QEFRVTASVGISVFPQDGLDEQTLKKNADIAMYQAKQCGKNNFQFYSAKLNADSLERMTL 532
            E  ++ASVGIS++P DG D   L KNAD AMY AK  G+N +QF++ ++NA   ER++L
Sbjct: 572 HELVLSASVGISMYPHDGTDLGALLKNADAAMYSAKAAGRNTYQFFTPEMNARVFERLSL 631

Query: 533 ELSLRHALERHEFQLHYQAKRDIGSGRITGMEALLRWNHPDLGIVAPMQFIPVAEETGLI 592
           E SLR AL R E  L+YQ +  +G G   G EALLRW HP+LG+V P +FIP+AEET LI
Sbjct: 632 ENSLRKALPRQELMLYYQPQYRVGGGDPIGFEALLRWRHPELGLVPPARFIPIAEETNLI 691

Query: 593 VPIGKWVLKTACQQNVAWQQQGLPCLGVAVNLTARQFADENLLTDLAGILAETGMDARLL 652
           +PIG+WVL  AC+Q +AWQ+ G P   VAVNL+  QF   NL++ +  +LAETG+ A  L
Sbjct: 692 LPIGEWVLAEACRQQMAWQRAGQPATTVAVNLSPVQFRQRNLVSLVQRVLAETGLPAAQL 751

Query: 653 ELEIAESLLMQDVKKALNVLTGLKHLKVRIAIDDFGIGYSSLSALEQFPLDVIKIDRSCI 712
           ELEI ESLLM D ++A+ VL  LK L +R+++DDFG GYSSLS L++FPLD IKID+S +
Sbjct: 752 ELEITESLLMDDTERAVEVLHELKSLGIRLSLDDFGTGYSSLSYLKRFPLDKIKIDQSFV 811

Query: 713 CDTSSVSEDKALTEAIIAMGRTLSLTVVAQGVETKEQADFLRDNACDEFQGFYFNKPVPA 772
            D    S D A+ +AIIA+   L L V+A+GVE + Q D+L  + C E QG+ F+ PVPA
Sbjct: 812 RDMIKDSGDAAIIQAIIAIAAKLELGVIAEGVENQSQLDYLALHQCGEVQGYLFSPPVPA 871



 Score = 62.4 bits (150), Expect = 1e-13
 Identities = 78/309 (25%), Positives = 124/309 (40%), Gaps = 28/309 (9%)

Query: 41  YILFPLLAALLLSVIWAGTLYLIKVEQTRA---QRGIAEASLE-IGATYEAQILRAVREI 96
           Y++  LLA        AG   L+ +E   +   +   A  ++E +  + E +   AV +I
Sbjct: 14  YVVIALLAL-------AGFCALLGLELNHSYDTEMAFARRNVENLADSLEGRTRGAVEKI 66

Query: 97  DQTLKLVKYTYESERETNPLPKLK-----ARALLPSPYLFDVSVVDARGL----VVASTQ 147
           D  L  V+Y+ +      P+         AR L   P    + V DA G           
Sbjct: 67  DLVLLEVQYSMQQRLAKGPVSPQAVNAELARLLSRIPESQSLRVADATGTFRYDASGKIS 126

Query: 148 SSEVGNRIAKDELQAVGRDTALSISRPWKSPATGEWKLRFSRRLDTGDGAFAGIAMVEVD 207
           S  +G+R A  +         L  S P  +  T  W +  SR L   DG F G+    V+
Sbjct: 127 SQSIGDR-AYFQRNKNDPKAGLVFSEPIFARITQNWVITLSRSLRDKDGRFLGLVQAAVN 185

Query: 208 AAYFVSSYDTSKLGNQGLLGLLGIDGVFRARRSGEAISAGNEVDYAAVVPDTENTD--AV 265
           A      + T  +G  G++ L   +    AR        G  +    +  +  + +  A 
Sbjct: 186 ADSLQQHFQTLNVGEGGVVALYDAELRLIARTPPLPNRLGKSILNTEISDNIRSREKGAF 245

Query: 266 RLINGTDGVRRYTSARQLYDFPLAVIVGLSEEEQLATVTRQAHTYLWRTAGGSLLLVLLA 325
             ++  DG+RR    R+L + P  V VGLS +E L+   R+  TY   TA   +L + L 
Sbjct: 246 EALSHQDGIRRVFGFRRLENLPFVVFVGLSRDEVLSEWYRKL-TYYGATA--VVLALALL 302

Query: 326 GLLARMSWQ 334
           GL+  + WQ
Sbjct: 303 GLI--LVWQ 309