Pairwise Alignments

Query, 790 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Pseudomonas fluorescens FW300-N2E2

Subject, 999 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score =  403 bits (1035), Expect = e-116
 Identities = 217/440 (49%), Positives = 292/440 (66%), Gaps = 5/440 (1%)

Query: 344 EAKIAYAENVEYLAYHDGLTALPNRSLFSKLLSQSIGEASRYHRQLAVLFLDLDRFKQVN 403
           E K A A+ +E L+  D LT LPNR  FS++L + + E      Q A++ LDLD+  +VN
Sbjct: 562 EKKAAQAQ-IETLSNVDQLTTLPNRQWFSRILGEWLQEGC----QGALVLLDLDQLSRVN 616

Query: 404 DTLGHDAGDQLLKEVALRLKACLRTSDTVARLGGDEFVILLPELSDDKDVATAAQKVLGA 463
           D  GH AGD+LL+ V  RL+  LR  D + RLGGD+F IL+    D + VAT  + +L  
Sbjct: 617 DAFGHAAGDELLRRVGERLRKGLRPHDILGRLGGDQFGILIDGRDDSRSVATVVRHLLDI 676

Query: 464 IARPFNLQGQEFRVTASVGISVFPQDGLDEQTLKKNADIAMYQAKQCGKNNFQFYSAKLN 523
           +A P  +QG +   TA  GI++FPQDG D   L +N D AM+ AK    N++ F++ ++N
Sbjct: 677 LAHPIQMQGSDVVTTACAGITLFPQDGNDVALLLRNVDTAMHHAKNSNLNSYHFFAPEMN 736

Query: 524 ADSLERMTLELSLRHALERHEFQLHYQAKRDIGSGRITGMEALLRWNHPDLGIVAPMQFI 583
              +ER+ LE  LR AL+  + +LHYQ + +IGSG+I G EALLRWNHP+LG+V+P  FI
Sbjct: 737 QRVVERLRLESELRLALQLDQLELHYQPQVEIGSGQINGFEALLRWNHPELGMVSPADFI 796

Query: 584 PVAEETGLIVPIGKWVLKTACQQNVAWQQQGLPCLGVAVNLTARQFADENLLTDLAGILA 643
           P+AEET LI+PIG WVLK AC+QN  WQ QGLP + VAVNL+A QF + +L+  ++  L 
Sbjct: 797 PLAEETRLILPIGAWVLKEACRQNRQWQDQGLPPMVVAVNLSALQFQESDLVAMVSAALM 856

Query: 644 ETGMDARLLELEIAESLLMQDVKKALNVLTGLKHLKVRIAIDDFGIGYSSLSALEQFPLD 703
            +G+  R LELEI ES++MQ+ ++ + +L  LK L VR++IDDFG GYSSLS L++FP+D
Sbjct: 857 TSGLAPRWLELEITESVIMQEPERMVGILEELKCLGVRLSIDDFGTGYSSLSYLKRFPID 916

Query: 704 VIKIDRSCICDTSSVSEDKALTEAIIAMGRTLSLTVVAQGVETKEQADFLRDNACDEFQG 763
            IKIDRS I D  S   D A+   +IAM   L   V+A+GVET EQ DFLR + C EFQG
Sbjct: 917 KIKIDRSFIRDVVSSQGDAAIVRMVIAMAGELERKVIAEGVETNEQLDFLRLHQCHEFQG 976

Query: 764 FYFNKPVPADQFKVLLKAQA 783
           F  ++PVPA Q   LL A A
Sbjct: 977 FLCSRPVPALQVPELLAAGA 996



 Score = 59.3 bits (142), Expect = 1e-12
 Identities = 81/342 (23%), Positives = 135/342 (39%), Gaps = 39/342 (11%)

Query: 47  LAALLLSVIWAGTLYLIKVEQTRAQRGIAEASLEIGATY----EAQILRAVREIDQTLKL 102
           L A L+ ++W G +  I ++  +++    +A+   G       E+ +  +++++D  L+ 
Sbjct: 9   LLATLVGLLWLGLVVWISMDVLQSREMAMDAARRQGEALARVLESSLQGSIQKVDLRLQE 68

Query: 103 V----KYTYESERETNPLPKLKARALLPSPYLFDVSVVDARGLVVASTQSSEVGN-RIAK 157
                +Y   + R    L     R+L   P      V D +G  +         N  IA 
Sbjct: 69  FVRRHQYAVAAGRPREELEPELNRSLGMFPEALSFRVADTQGRYIYDASGVLASNVNIAD 128

Query: 158 DELQAVGRD---TALSISRPWKSPATGEWKLRFSRRLDTGDGAFAGIAMVEVDAAYFVSS 214
            +   + +D     L +S P +S  TG+W L  +RRL    G F G+ +  +   YF S 
Sbjct: 129 RDYFRLLQDQPGAGLVVSGPMQSRVTGDWVLVAARRLQDEGGTFQGVVLASLRVKYFESL 188

Query: 215 YDTSKLGNQGLLGLLGIDGVFRAR------RSGEAISAGNEVDYAAVVPDTENTDAVRLI 268
           + T  LG +  + L   D    AR      R G+ ++     D+   +   E + +    
Sbjct: 189 FGTLNLGPRDTIALWTRDMRLMARWPHLEARMGQPVANSPTQDF---LQRGETSGSFIRT 245

Query: 269 NGTDGVRRYTSARQLYDFPLAVIVGLSEEEQLATVTRQAHTYLWRTAGGSLLLVLLAGLL 328
              DG+ R    R L +    V VG + ++ LA+   +A  Y      G +L V LA   
Sbjct: 246 GELDGMDRLFVFRALPEHDFLVTVGYAIDDVLASWRHRALIY---ACLGLVLTVALA--F 300

Query: 329 ARMSWQ--------LVQSRLRAGEAKIAYAENVEYLAYHDGL 362
             + W         L Q   RA E K     N E LA  D +
Sbjct: 301 TVLVWHRRFSAATALAQRMSRAAEEK-----NRESLALLDAI 337