Pairwise Alignments

Query, 517 a.a., Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) from Pseudomonas fluorescens FW300-N2E2

Subject, 503 a.a., ribose import ATP-binding protein RbsA from Phaeobacter inhibens DSM 17395

 Score =  358 bits (920), Expect = e-103
 Identities = 210/497 (42%), Positives = 302/497 (60%), Gaps = 11/497 (2%)

Query: 5   DPNAVLCVSGIGKTY-AQPVLTDINLTLMRGEVLALTGENGAGKSTLSKIIGGLVTPTTG 63
           + + VL + GI KT+     L  ++LT++ GEV AL GENGAGKSTL K++GG+  P  G
Sbjct: 3   EQSPVLRLEGIVKTFPGVRALDGVSLTILPGEVHALMGENGAGKSTLMKVLGGIHQPDEG 62

Query: 64  QMQFQGQDYRPGSRTQAEELGVRMVMQELNLLPTLSVAENLFLDNLPNHG----GWISRK 119
           Q+    Q         A+  G+  + QEL+L   LSVAEN++L  LP        W   +
Sbjct: 63  QIIVAEQPVVMSGPLDAKAKGIVFIHQELSLADELSVAENIYLGELPRKRFGLVDWAELE 122

Query: 120 QLRKAAIEAMAQVGLDAIDPDTLVGELGIGHQQMVEIARNLIGDCHVLILDEPTAMLTAR 179
               A +E + +VG +A    T VG+L I +QQMVEIAR L  D   +I DEPTA LT  
Sbjct: 123 AKTNAILEKL-KVGFNA---KTRVGDLSIANQQMVEIARALTVDAKAVIFDEPTASLTDA 178

Query: 180 EVEMLFEQITRLQARGVSIIYISHRLEELARVAQRIAVLRDGNLVCVEPMANYNSEQLVT 239
           E  +LFE I+ LQ +GV I YISHR+EE+ ++  RI+VLRDG        A  N E +  
Sbjct: 179 EKVVLFEVISDLQEQGVGIAYISHRMEEIFKITDRISVLRDGQYQGTVNTAETNEENVTQ 238

Query: 240 LMVGRELGEHIDLGPRQIGAPALTVKGLTRSDKVRDVSFEVRSGEIFGISGLIGAGRTEL 299
           +M+GR+L    +    ++G  AL V+GL+      DV+FEVR GE+ G  GL+GAGRTE+
Sbjct: 239 MMIGRKLDLSRNEAHHELGEVALEVRGLSCGSLFEDVNFEVRRGEVVGFYGLVGAGRTEI 298

Query: 300 LRLIFGADTADSGTVALGSPAQVVSIRSPADAVAHGIALITEDRKGEGLLLTQSIAANIA 359
              +FG     SG++ L      V+I SP DA+  GI+L+ EDRKG+GL+L  +   N+ 
Sbjct: 299 AETLFGLRNPTSGSIFLDGAE--VAITSPHDAIERGISLVPEDRKGQGLVLGMNCRDNMT 356

Query: 360 LGNMPEISSAGLVNGDAELALAQRQVDAMRIRSSSPTQLVSELSGGNQQKVVIGRWLERD 419
           L  + ++ +   V   AE+A+  +  D + IR+    QLV  LSGGNQQK+VIG+WL   
Sbjct: 357 LPQVDDLKAGPFVADGAEIAIFDQYRDKLDIRTPGWKQLVGNLSGGNQQKIVIGKWLSMR 416

Query: 420 CAVMLFDEPTRGIDVGAKFDIYALLGELTRQGKALVVVSSDLRELMLICDRIGVLSAGRL 479
             V++ DEPTRGIDVG+K +I+ LL +L  QG A++V+SS++ E++ + DRI  + +GR+
Sbjct: 417 PNVLIVDEPTRGIDVGSKAEIHNLLRDLAAQGYAVIVISSEMPEVLHVADRIVAMYSGRI 476

Query: 480 IDTFERDSWTQDDLLAA 496
           + TF  +  T+++L+AA
Sbjct: 477 MRTFTSEEVTEENLIAA 493



 Score = 75.5 bits (184), Expect = 4e-18
 Identities = 60/223 (26%), Positives = 103/223 (46%), Gaps = 5/223 (2%)

Query: 26  DINLTLMRGEVLALTGENGAGKSTLSKIIGGLVTPTTGQMQFQGQDYRPGSRTQAEELGV 85
           D+N  + RGEV+   G  GAG++ +++ + GL  PT+G +   G +    S   A E G+
Sbjct: 274 DVNFEVRRGEVVGFYGLVGAGRTEIAETLFGLRNPTSGSIFLDGAEVAITSPHDAIERGI 333

Query: 86  RMVMQELN---LLPTLSVAENLFLDNLPNHGGWISRKQLRKAAIEAMAQVGLDAIDPD-- 140
            +V ++     L+  ++  +N+ L  + +           + AI    +  LD   P   
Sbjct: 334 SLVPEDRKGQGLVLGMNCRDNMTLPQVDDLKAGPFVADGAEIAIFDQYRDKLDIRTPGWK 393

Query: 141 TLVGELGIGHQQMVEIARNLIGDCHVLILDEPTAMLTAREVEMLFEQITRLQARGVSIIY 200
            LVG L  G+QQ + I + L    +VLI+DEPT  +       +   +  L A+G ++I 
Sbjct: 394 QLVGNLSGGNQQKIVIGKWLSMRPNVLIVDEPTRGIDVGSKAEIHNLLRDLAAQGYAVIV 453

Query: 201 ISHRLEELARVAQRIAVLRDGNLVCVEPMANYNSEQLVTLMVG 243
           IS  + E+  VA RI  +  G ++          E L+  + G
Sbjct: 454 ISSEMPEVLHVADRIVAMYSGRIMRTFTSEEVTEENLIAAISG 496