Pairwise Alignments

Query, 244 a.a., ABC-type amino acid transport, signal transduction systems, periplasmic component/domain from Pseudomonas fluorescens FW300-N2E2

Subject, 257 a.a., extracellular solute-binding protein (RefSeq) from Shewanella loihica PV-4

 Score = 80.5 bits (197), Expect = 3e-20
 Identities = 58/206 (28%), Positives = 94/206 (45%), Gaps = 7/206 (3%)

Query: 34  YAYQRDDKVVGPGIRIAEETLK--NAQFTDYSLSLYPWARAYEKALHEPNVLIFPLDRTP 91
           Y Y+   ++ G  + +     +  + +F  +S+ L PWAR Y+      N ++F   RTP
Sbjct: 40  YNYRESHQLKGIAVDLLAAAARRVDGRFDIHSIQLVPWARGYKLTRTGKNTVLFSTTRTP 99

Query: 92  AREQLFKWVGEIHRVASRLYKMRDSKGIAINNLEDAKQYSIGVVRNDAKQIYLQQRGFTR 151
            RE LF WVG I      ++   D + I I ++E   QYSIGV+  D  +  L   G  R
Sbjct: 100 YREPLFDWVGPISATRIVIFARAD-RVIHITDVEQLNQYSIGVIAQDIGEQALLAAGIAR 158

Query: 152 LVISANNHDN--FQKLLNHQIQLLPMPENTARLMSKDAQVDFTSLEEVYTLDEQPHRVHL 209
             +   +        L   ++ L    E   R + K   VD    E V+TL  +   ++ 
Sbjct: 159 EQLRRAHEATSLVHMLRRERVDLWAYEEVVGRYLMKQEGVDTDEFEVVFTL--KVSELYY 216

Query: 210 AFSLSTPDEVVARAQRAFEQLKASGE 235
           AFS  +  E+  R Q+  +++KA+ E
Sbjct: 217 AFSRDSDPELRRRLQQGIDKVKATIE 242