Pairwise Alignments

Query, 244 a.a., ABC-type amino acid transport, signal transduction systems, periplasmic component/domain from Pseudomonas fluorescens FW300-N2E2

Subject, 265 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 94.4 bits (233), Expect = 2e-24
 Identities = 73/238 (30%), Positives = 114/238 (47%), Gaps = 5/238 (2%)

Query: 3   YRLMLCSCLLLTSISLQSHAEAIEVVTEDSLYAYQRDDKVVGPGIRIAEETLKNAQFTDY 62
           YRL+LC  L  + +     A    V       ++++D    G G+ +    L+ +     
Sbjct: 10  YRLLLCMSLGYSGLVFAVTAPVRLVTEAWPPMSFEQDGVPTGFGVELVN-MLQVSLGQQQ 68

Query: 63  SLSLYPWARAYEKALHEPNVLIFPLDRTPAREQLFKWVGEIHRVASRLYKMRDSKGIAIN 122
           S+ + PWARAY  A   PNVL+F    +  RE  F ++G I      LY   D   I IN
Sbjct: 69  SIEVLPWARAYSIASTTPNVLLFATSISDERETHFDFIGPIATSKITLYAKADD-SININ 127

Query: 123 NLEDAKQYSI-GVVRNDAKQIYLQQRGFTRLVISANNHDNFQKLLNHQIQLLPMPENTAR 181
            L D     I GV R       LQQ+G   L++++    + ++LL  +++L    +   +
Sbjct: 128 QLSDVNAAGIVGVYRESVGAQLLQQQGVNALLVASFPQQSAKQLLFSRVRLWCQADLAVK 187

Query: 182 LMSKDAQVDFTSLEEVYTLDEQPHRVHLAFSLSTPDEVVARAQRAFEQLKASGEVARI 239
            + ++     ++++ VYTL E   R++LAFS  TP E V R Q   E+ K SGE AR+
Sbjct: 188 HILEEVGAKESAIKPVYTLAE--IRLYLAFSKGTPAETVQRWQTELEKRKESGEFARL 243