Pairwise Alignments

Query, 244 a.a., ABC-type amino acid transport, signal transduction systems, periplasmic component/domain from Pseudomonas fluorescens FW300-N2E2

Subject, 255 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 92.8 bits (229), Expect = 6e-24
 Identities = 65/241 (26%), Positives = 126/241 (52%), Gaps = 7/241 (2%)

Query: 1   MHYRLMLCSCLLLTSISLQSHAEAIEVVTED-SLYAYQRDDKVVGPGIRIAEETLKNAQF 59
           M +   L   + L+SI L + A  + + TE+ +  ++  D K  G  +++ +E  K    
Sbjct: 1   MKFFTHLVIVVFLSSIPLTAQA-TLNIYTEEWAPISFSVDGKPDGLAVQVVQEIQKRIDN 59

Query: 60  TDYSLSLYPWARAYEKALHEPNVLIFPLDRTPAREQLFKWVGEIHRVASRLYKMRDSKGI 119
            D  + + PWAR ++    +PN ++F + RT  RE++F  +G +    +  Y +++S  +
Sbjct: 60  QD-PIKVVPWARGWKIITEQPNTVLFTMTRTAERERMFSLIGPVAVGTTNFYALKNS-NL 117

Query: 120 AINNLEDAKQ-YSIGVVRNDAKQIYLQQRGFTRLVISANNHDNFQKLLNHQIQLLPMPEN 178
            IN++EDAKQ  +IGV R+  ++  L +  F+ +  S+    + ++L+  +I L      
Sbjct: 118 KINSIEDAKQAKAIGVYRSSVEEQLLIEHRFSNIAPSSTPLLSAKQLIKQRIDLWCNANL 177

Query: 179 TARLMSKDAQVDFTSLEEVYTLDEQPHRVHLAFSLSTPDEVVARAQRAFEQLKASGEVAR 238
           TA  +  +A      ++ +YT+    + +++AFS  TP E V + ++A   +KA G  A+
Sbjct: 178 TAPSILAEAGASMDDVKSLYTI--SANHLYIAFSQGTPSEEVDKWKQALISIKADGTFAQ 235

Query: 239 I 239
           I
Sbjct: 236 I 236