Pairwise Alignments

Query, 318 a.a., Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) from Pseudomonas fluorescens FW300-N2E2

Subject, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

 Score =  141 bits (356), Expect = 2e-38
 Identities = 92/285 (32%), Positives = 163/285 (57%), Gaps = 12/285 (4%)

Query: 19  SAALPLSSAFAQTAEKPKVALVMKSLANEFFLTMEDGAKAYQKEHSADFDLISNGIKDET 78
           SAAL  +S       +  VA+V+ +L N FF+TM+DGA+A  KE    ++LI   +  + 
Sbjct: 11  SAALLSTSVSFVAQAQDTVAIVLSTLNNPFFVTMKDGAEAKAKE--LGYNLIV--LDSQN 66

Query: 79  DTANQIRIVEQMIVSKVDALIIAPADSKAMVPVIKKAVDAGITVINIDNQLDPAVVKSKN 138
           D + ++  VE + V  V A++I P DS A+   I+ A  + I V+ +D       V    
Sbjct: 67  DPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASRGEV---- 122

Query: 139 INVPFVGPDNRKGARLVGEYLAKQLKAGDEVGIIEGVSTTTNAQARTAGFKDAMEAAQVK 198
             V  +  DN  G  + G ++  ++ +  +V  +EG++ T+ A+ R  GF +A++ ++++
Sbjct: 123 --VSHIASDNVVGGEMAGHFIEAKIGSDAKVIQLEGIAGTSAARERGEGFMNAVKGSKMQ 180

Query: 199 VVSLQSGDWEINKGNQVAASMLSEYPNIKALLAGNDSMAVGAVSAVRAAGKAGKVQVVGY 258
           +++ Q  D++  KG  V  ++L+  P+++A+ A ND MA+GA+ A++A+GK+  V +VG+
Sbjct: 181 LLASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAIQASGKS--VMIVGF 238

Query: 259 DNINAIKPMLKDGRVLATADQFAAKQAVFGIETALKILKGEKVDS 303
           D  +     ++ G++ AT  Q        GIETA K+LKGEKV++
Sbjct: 239 DGTDDGIAAVERGQLAATVAQQPDMIGAIGIETADKMLKGEKVEA 283