Pairwise Alignments

Query, 438 a.a., HlyD family secretion protein from Pseudomonas fluorescens FW300-N2E2

Subject, 460 a.a., HlyD family type I secretion membrane fusion protein (RefSeq) from Shewanella loihica PV-4

 Score =  161 bits (407), Expect = 5e-44
 Identities = 122/448 (27%), Positives = 218/448 (48%), Gaps = 33/448 (7%)

Query: 12  DLPTSDHKIRRLGVVIIGVIFGVFGTWAAIAPLDGAAYAPGVVTVQAYRKTVQHLEGGIV 71
           D PTS     RL +  +  +   F  WA  A LD      G V   +  + +Q L+GGI+
Sbjct: 23  DAPTS----HRLIIWALAALAFSFLVWAYFAELDRVTTGTGKVIPSSQVQVIQSLDGGIM 78

Query: 72  KALLAHDGDIVKRDDPLIILDDAQLRFEYEMARGQLIAARAMEARLIAERDSLPMISFGD 131
           K L   +G  V +  PL+ +DD + R ++     ++ + +A   RL AE +S   I+  D
Sbjct: 79  KELYVREGMTVTKGQPLVRIDDTRFRSDFAQQEQEVYSLQANVIRLRAELNS---ITISD 135

Query: 132 IADP-------------------DSVRGMEARQGETRVFSARQGSRLGQIAVLRERVGQF 172
           +A                     +S   +  RQ +   +S R  +   Q+ +L  ++ Q 
Sbjct: 136 VAADWREQVKIAKQPLQFPPELTESEHDLIERQRDE--YSGRLDNLSNQLEILARQIQQK 193

Query: 173 RQQIKGLESMVGSKVHLEKSYSGEIDELADLLKQGFVDKQRLLEQERKLGLLRSEVADHR 232
           +Q+ + L S + +     +  + E++    L  +G V +  LL+ ER +  +R E++  R
Sbjct: 194 QQETEELASKINTLTTSFQLVTRELELTRPLADKGIVPEVELLKLERNVNDIRGELSSLR 253

Query: 233 STIDRTRLQINETQLQILQVDKDFNADVVKQLAEVQTRIYDLKEKTSALEDRLSRIVIRA 292
               + +   +E  L+  +    + A+   QL E+QTR+  + E      D++S+  I +
Sbjct: 254 LLRPKLKASQDEAILKRREAVFVYAAEARTQLNEMQTRLSRINEAQVGARDKVSKAEIVS 313

Query: 293 PEAGMVIDMSVHTIGGIVRPATPLLDIVPSVSDLVIEAQVAPVDIDRIAIGKRADIRFGA 352
           P  G +  + ++T+GG+V+P   +++IVPS   L+IE ++ P DI  +  G  A ++  A
Sbjct: 314 PVNGTIKTVHINTLGGVVQPGIDIIEIVPSEDQLLIETKIIPKDIAFLHPGLPAVVKVTA 373

Query: 353 FNSATTPVIEGEVSSVSADRMTNEKTGTAYYLARVRVTEAGARTLGERKL---LPGMPAD 409
           ++      + G V  +SAD  T ++ G ++YL RVR TE  + T  +  L   +PGM   
Sbjct: 374 YDFTRYGGLNGVVEHISAD-TTQDEEGNSFYLVRVR-TELSSLTKDDGTLMPIIPGMLTT 431

Query: 410 VLIITGQRTLLQYLMQPARNALSQSMIE 437
           V +ITGQR++L+Y++ P   A   ++ E
Sbjct: 432 VDVITGQRSVLEYILNPILRARDTALRE 459