Pairwise Alignments

Query, 438 a.a., HlyD family secretion protein from Pseudomonas fluorescens FW300-N2E2

Subject, 448 a.a., type I secretion membrane fusion protein, HlyD family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  174 bits (440), Expect = 7e-48
 Identities = 119/419 (28%), Positives = 216/419 (51%), Gaps = 13/419 (3%)

Query: 23  LGVVIIGVIFGVFGTWAAIAPLDGAAYAPGVVTVQAYRKTVQHLEGGIVKALLAHDGDIV 82
           L   I GV F +F  WAA APLD      G V      + +Q+LEGGI++ LL H+  IV
Sbjct: 38  LSCAIFGV-FAIFFVWAAFAPLDEVTRGQGQVIPSQRVQVIQNLEGGILRELLVHESQIV 96

Query: 83  KRDDPLIILDDAQLRFEYEMARGQLIAARAMEARLIAERDSLPMISFGDIADPDSVRGME 142
           ++ D L+ +D+      Y  A G+ +  +   ARL AE +    +   ++         +
Sbjct: 97  EKGDVLLRIDNEAAESFYRDALGKSVEHQIAIARLEAELEGRDPVYPAELM----TEWPQ 152

Query: 143 ARQGETRVFSARQGSRLGQIAVLRERVGQFRQQIKGLESMVGSKVHLEKSYSGEIDE--- 199
             + +  V+ AR+     +  VL  ++ Q  Q+I   E M   K  LE S    +++   
Sbjct: 153 VVENQADVYRARRQQVAVEQRVLEAQLHQKEQEI---EEMTSRKRQLEDSLRVAVEQREI 209

Query: 200 LADLLKQGFVDKQRLLEQERKLGLLRSEVADHRSTIDRTRLQINETQLQILQVDKDFNAD 259
              L+++    +   L  E+K+  LR E++    +I + R   +E + ++        ++
Sbjct: 210 ARPLMEKQIYPRVEYLSLEQKVISLRGEISSLAISIPKARAAADEAKERLAFRKAQIRSE 269

Query: 260 VVKQLAEVQTRIYDLKEKTSALEDRLSRIVIRAPEAGMVIDMSVHTIGGIVRPATPLLDI 319
            +++L + +  +  L+E  SA  DR++R  +R+P  G V  + ++T+GG+++P  P+++I
Sbjct: 270 ALEELNKRRGELNSLRETLSAGGDRVTRTDVRSPVRGTVKRLIINTVGGVIKPGEPIMEI 329

Query: 320 VPSVSDLVIEAQVAPVDIDRIAIGKRADIRFGAFNSATTPVIEGEVSSVSADRMTNEKTG 379
           VP    L+IEA++ P DI  +   ++A ++  A++ +    +EG V  +SAD + + K G
Sbjct: 330 VPLDDTLLIEARIRPADIAFLHPDQKAVVKITAYDYSIYGGLEGVVEQISADTIEDRK-G 388

Query: 380 TAYYLARVRVTEAGARTLGER-KLLPGMPADVLIITGQRTLLQYLMQPARNALSQSMIE 437
             YYL ++R  ++     GE   ++PGM A V I+TG++T+L YL++P   A   ++ E
Sbjct: 389 EFYYLVKLRTRKSAIVYRGEALPIMPGMTATVDILTGKKTVLDYLLKPILKAQQNALRE 447