Pairwise Alignments

Query, 438 a.a., HlyD family secretion protein from Pseudomonas fluorescens FW300-N2E2

Subject, 460 a.a., HlyD family type I secretion membrane fusion protein (RefSeq) from Shewanella sp. ANA-3

 Score =  172 bits (436), Expect = 2e-47
 Identities = 116/432 (26%), Positives = 218/432 (50%), Gaps = 17/432 (3%)

Query: 22  RLGVVIIGVIFGVFGTWAAIAPLDGAAYAPGVVTVQAYRKTVQHLEGGIVKALLAHDGDI 81
           RL +  +  +   F  WA  A LD      G V   +  + +Q L+GGI++ L   +GDI
Sbjct: 29  RLIIWALAAMVACFLLWAGFAKLDKVTTGSGKVIPSSQVQVIQSLDGGIMQELFVREGDI 88

Query: 82  VKRDDPLIILDDAQLRFEYEMARGQLIAARAMEARLIAERDSLPM------------ISF 129
           V +  PL+ +DD + R ++     +++  +    R+ AE DS+ +            I+ 
Sbjct: 89  VTKGQPLVRIDDTRFRSDFAQQEQEVLGLKTNAIRMRAELDSILISDMTSDWREQVKITK 148

Query: 130 GDIADPDSVRGMEAR--QGETRVFSARQGSRLGQIAVLRERVGQFRQQIKGLESMVGSKV 187
             +  PDS+   E    + +   ++ R  +   Q+ +L  ++ Q +Q+I  L S   +  
Sbjct: 149 KALVFPDSITEAEPALVRRQQEEYNGRLDNLSNQLEILVRQIQQRQQEIDDLASKTTTLT 208

Query: 188 HLEKSYSGEIDELADLLKQGFVDKQRLLEQERKLGLLRSEVADHRSTIDRTRLQINETQL 247
              +  S E++    L K+G V +  LL+ ER +   + E+   R    + +  ++E  L
Sbjct: 209 TSMQLISRELELTRPLAKKGIVPEVELLKLERAVNDAQGELNSLRLLRPKLKAALDEAIL 268

Query: 248 QILQVDKDFNADVVKQLAEVQTRIYDLKEKTSALEDRLSRIVIRAPEAGMVIDMSVHTIG 307
           +  +    + AD+  QL E QTR+  + E     +D++S+ VI +P  G +  + ++T+G
Sbjct: 269 KRREAVFVYAADLRAQLNETQTRLSRMNEAQVGAQDKVSKAVITSPVNGTIKTVHINTLG 328

Query: 308 GIVRPATPLLDIVPSVSDLVIEAQVAPVDIDRIAIGKRADIRFGAFNSATTPVIEGEVSS 367
           G+V+P   +++IVPS   L+IE ++ P DI  +  G  A ++  A++      ++G V  
Sbjct: 329 GVVQPGVDIIEIVPSEDQLLIETKILPKDIAFLHTGLPAVVKVTAYDFTRYGGLKGTVEH 388

Query: 368 VSADRMTNEKTGTAYYLARVRVTEAG-ARTLG-ERKLLPGMPADVLIITGQRTLLQYLMQ 425
           +SAD   +++ G ++YL +VR  E+   +  G +  ++PGM   V +ITGQR++L+Y++ 
Sbjct: 389 ISADTSQDDE-GNSFYLIKVRTEESSLIKDDGTQMPIIPGMLTTVDVITGQRSILEYILN 447

Query: 426 PARNALSQSMIE 437
           P   A   ++ E
Sbjct: 448 PILRAKDTALRE 459