Pairwise Alignments

Query, 310 a.a., Transcriptional regulator, LysR family from Pseudomonas fluorescens FW300-N2E2

Subject, 289 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  166 bits (420), Expect = 6e-46
 Identities = 99/293 (33%), Positives = 161/293 (54%), Gaps = 8/293 (2%)

Query: 8   KGIDVFVCVAESGSFKAAAERMSLTSSAISKSVARLESRLGVRLFERTTRRVSLTDAGRA 67
           +G+  FV VAE+ SF  AA+++ ++++ +S+ V+ LE+R+  +LF RTTR+VS+++ GR 
Sbjct: 5   EGVSEFVAVAEAESFTKAAKQLGISTAQVSRQVSALETRMATKLFHRTTRKVSVSEVGRI 64

Query: 68  FLRTCTGVLADLEEAEWSLHAENTEPRGRVRIDLPGAFGRSQVLPIVLRCLQDFPQLVPH 127
           + + C  VL  LEEAE ++    + PRG ++I  P  +G   ++P+V   +  +P+L   
Sbjct: 65  YYQHCRQVLDGLEEAERAITNLQSTPRGLLKITAPVTYGEKTLVPLVNDFIAKYPELEVK 124

Query: 128 LSFSDGFIDPVQEGVDIVIRLGGADIWPATWGHRHLGSEWHIFCASPAYLARHGTPLIDL 187
           ++ ++  +D + +G D+ IRLG   +  ++   + LGS     CASP Y++  G P    
Sbjct: 125 INLTNQKVDLIDDGYDLAIRLG--QLKDSSIMAKRLGSRTQYVCASPDYVSTFGIPHSLS 182

Query: 188 DLEHHQCIAYGWPDGNVSPWNFAGHRGETLRKQVSPTLVVGDGEGLVIAVLAGCGIAQLP 247
           +LE H C+      G +  W F    G+T   +V   L    G  LV A + G GI QLP
Sbjct: 183 ELEQHNCLL-----GTLDYWRFQ-ENGKTRNVRVKGNLTCNSGYALVDAAIKGIGIIQLP 236

Query: 248 SWLVQRQLDEGTLVEVLPQWATDGMAINLAWQKNRGTLPKVAALLDVLTASLA 300
            + V   L++G LV +L Q       I   +  NR   PKV  LLD L+ +L+
Sbjct: 237 EYYVLPFLEDGQLVPLLEQNRQPKEGIWALYPHNRHLSPKVRMLLDYLSEALS 289