Pairwise Alignments

Query, 493 a.a., Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) from Pseudomonas fluorescens FW300-N2E2

Subject, 598 a.a., AMP-dependent synthetase and ligase (RefSeq) from Shewanella loihica PV-4

 Score =  100 bits (249), Expect = 1e-25
 Identities = 68/249 (27%), Positives = 114/249 (45%), Gaps = 28/249 (11%)

Query: 264 VRFAAVGGARVSHDLLQRAQRVGLPVFEGYGLSECASVVCLNRPQAHRAGSVGQPLPHVE 323
           ++F   GGA +  ++      + +PV  GYG++E  + V  N      AGS G+ LP VE
Sbjct: 346 LKFMPCGGAALDQNVASFFHGIDIPVLCGYGMTETTATVTCNTLDNRVAGSNGKTLPEVE 405

Query: 324 IRLAEDGEVLIKGSTLL-GYLGEPPHASE-----WWPSGDLGEFDEDGFLYLRGRKKHQF 377
           I+L +D E+L++G T++ GY   P   ++     W  +GD G+ DE G L++  R K   
Sbjct: 406 IKLGKDNEILVRGDTVMRGYYNRPQETADSFEDGWLKTGDAGQIDEQGNLFITDRIKELM 465

Query: 378 VTSFGRNVNPEWVEAELTQGGDIAQAFVYGEAMPHNHALLWPA----------------- 420
            TS G+ + P+ VE ++     I Q  V  +A  +  AL+ PA                 
Sbjct: 466 KTSNGKYIAPQRVEGKVGCCPFIEQVAVIADAKNYVTALIVPAFESLEAWAEEKGLHYES 525

Query: 421 -----RADCTDQTLELAVAKANDTLPDYARVHRWTRLDQPFSAANGMLTANGRPRREAIV 475
                R     +  E  +      L  + ++ ++T L + FS   G+LT   + RR+ I 
Sbjct: 526 PMELLRHSHVIEHFEQRLKHLQQELAGFEKIKKFTLLPEAFSMEAGLLTPTMKLRRKMIY 585

Query: 476 EHYRAQLTS 484
             Y  ++ +
Sbjct: 586 HKYATEINA 594



 Score = 38.9 bits (89), Expect = 5e-07
 Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 12/116 (10%)

Query: 143 LTFTSGTTGTPKGVCLSADSLLRVARELEQASQPVEARHHLALLPLAILLENLGCYAALY 202
           L +TSGTTG PKGV L   ++  V R+ +           LA LPL+ + E    +  L 
Sbjct: 185 LIYTSGTTGDPKGVMLDYRNIASVIRQHDTILPFTPGDVSLAFLPLSHVFERGWSFYVLC 244

Query: 203 AGAMLSLPSQKTLGIQGASGVDPTRLLGCLAERRAQSLILVPQLLLMLVMAAEQKM 258
            G                   DP  +   + + R  +L +VP+ L  +  A + K+
Sbjct: 245 RGG------------HNVYLKDPMTVKEAIVDIRPHTLCVVPRFLEKVYSAVQDKV 288