Pairwise Alignments

Query, 493 a.a., Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) from Pseudomonas fluorescens FW300-N2E2

Subject, 568 a.a., AMP-binding family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 95.5 bits (236), Expect = 4e-24
 Identities = 98/407 (24%), Positives = 161/407 (39%), Gaps = 74/407 (18%)

Query: 143 LTFTSGTTGTPKGVCLSADSLLRVARELEQASQPVEARHHLALLPLAILLENLGCYAALY 202
           L +TSGTTG PKGV L   ++     + +           LA LPL+ + E    +  L 
Sbjct: 155 LIYTSGTTGDPKGVMLDYRNMASTVHQHDLILPFKTGDVSLAFLPLSHVFERGWSFYVLC 214

Query: 203 AGAMLSLPSQKTLGIQGA-SGVDPTRLLGCLAERRAQSLILVPQLLLMLVMAAEQKMF-- 259
            G   ++  Q T  ++ A S V P  L  C+  R  + +    Q  +       +K+F  
Sbjct: 215 RGGR-NVYLQNTQRVKEAISAVRPHTL--CVVPRFLEKVYSAVQDKVAKSAEGRKKLFAW 271

Query: 260 -----------------------------NPHI-----------VRFAAVGGARVSHDLL 279
                                        N  +           ++F   GGA +  ++ 
Sbjct: 272 AMGVGERQFEVSQGRVKGGLWLSLQWRLANKLVYSKLQAVLGGRLKFMPCGGAALDLNVA 331

Query: 280 QRAQRVGLPVFEGYGLSECASVVCLNRPQAHRAGSVGQPLPHVEIRLAEDGEVLIKGSTL 339
                +G+PV  GYG++E  + V  N      AGS G+ LP ++I+L +D E+L++G T+
Sbjct: 332 SFFHAIGIPVLCGYGMTETNATVTCNTLDNRVAGSNGKVLPEIQIKLGKDDEILVRGDTV 391

Query: 340 L-GYLGEPPHASE-----WWPSGDLGEFDEDGFLYLRGRKKHQFVTSFGRNVNPEWVEAE 393
           + GY   P   +      W  +GD G  D  G L++  R K    TS G+ + P+ VE  
Sbjct: 392 MRGYYNRPEDTAAAFEDGWLKTGDAGRLDAHGNLFITDRIKELMKTSNGKYIAPQRVEGT 451

Query: 394 LTQGGDIAQAFVYGEAMPHNHALLWPA----------------------RADCTDQTLEL 431
           + +   I Q  V  +A  +  AL+ PA                      R     +  E 
Sbjct: 452 VGRCPFIEQVAVIADARNYVTALIVPAFESLEAWAKEKGLKYESPIELLRHSHVVEHFEQ 511

Query: 432 AVAKANDTLPDYARVHRWTRLDQPFSAANGMLTANGRPRREAIVEHY 478
            +      L  + ++ ++T L + FS   G++T   + RR+ I   Y
Sbjct: 512 RLKHLQQELAGFEQIKKFTLLPEAFSMEAGLITPTLKLRRKMIYHKY 558