Pairwise Alignments

Query, 367 a.a., Probable periplasmic spermidine/putrescine-binding protein from Pseudomonas fluorescens FW300-N2E2

Subject, 366 a.a., extracellular solute-binding protein (RefSeq) from Shewanella loihica PV-4

 Score =  322 bits (825), Expect = 1e-92
 Identities = 158/363 (43%), Positives = 239/363 (65%), Gaps = 1/363 (0%)

Query: 6   LRTIFSASLLCAGISTS-VAAVEPGMYLYNWFGLLAPETPKEFEQETGTRVHMDAFDSAE 64
           L+ + + +L+ AG+ TS V + E  + +YNW   +A +T   FE+ETG +V  D FDS E
Sbjct: 4   LKKMTTLALVTAGVFTSSVVSAEEVVRVYNWSDYIAEDTLANFEKETGIKVIYDVFDSNE 63

Query: 65  IMQSKVMAGRTGYDVVVATSNVLPSLIRAGVLQPLDRSQLSNFSHIDPDLLSQLAVNDPG 124
           ++++K+++GR+GYD+VV ++N L   I+AG  Q LD+SQL+N  +++P+L+ QL   DP 
Sbjct: 64  VVEAKLLSGRSGYDIVVPSNNFLAKQIKAGAFQKLDQSQLTNHKNLNPELMKQLETADPR 123

Query: 125 NRYAVPYLWGTTGIGYDVDKVRGALGDNAPVNSWDLIFKEENISKLQSCGVAMLDSPSEI 184
           N +AVPYLWGTTGIGY+  KV+  LG++APV+S +LIF  +   K+  CG ++LDS  E+
Sbjct: 124 NEHAVPYLWGTTGIGYNEAKVKQVLGEDAPVDSLELIFNPKYAEKIAKCGFSLLDSADEM 183

Query: 185 ISIALNYLGLPSNSKNPDDYQKAQALLLKIRPYVLYFDSSKIDADLADGNICAVVGWANG 244
           + +A+ YLGL  NS   +DY KA  ++ KIRP+V YF SS+   DLA+G+IC   G++  
Sbjct: 184 LPMAMIYLGLDPNSTKSEDYAKAGEVMAKIRPFVTYFHSSRYITDLANGDICVAFGYSGD 243

Query: 245 ALAAQAINEKANTGRKIAYSLPREGALSWSENLVLLKDAPHPKEGMAFINYMMRPEVIAK 304
              A A  E+A  G  I Y++P+EG+  W + L +  DA + K    FINY++RPEVIA 
Sbjct: 244 VFQAAARAEEAENGNVIGYAIPKEGSNLWFDMLAIPADAKNVKNAHTFINYLLRPEVIAP 303

Query: 305 TSNHTLYPNANKDAAEFVERKLRDNPWIYPDKKTIATLIPLEPLPLKLERIRTRIWTKVK 364
            +N+  Y N N  A E V+ ++R++  IYP  + ++ L   +  P+K +R  TR+WTKVK
Sbjct: 304 ITNYVAYANPNVPAQELVDEEIRNDAAIYPTPEVLSRLYVADVRPMKAQRAMTRVWTKVK 363

Query: 365 SGV 367
           SG+
Sbjct: 364 SGM 366