Pairwise Alignments

Query, 293 a.a., High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) from Pseudomonas fluorescens FW300-N2E2

Subject, 297 a.a., inner-membrane translocator (RefSeq) from Shewanella loihica PV-4

 Score =  172 bits (436), Expect = 8e-48
 Identities = 96/294 (32%), Positives = 166/294 (56%), Gaps = 2/294 (0%)

Query: 2   EFFFEVLIGGLLAGVMYALVAIGFVLIYKASGVFNFAQGAMVLFSA-LTFVSLVERGVPF 60
           E   +++I GL+ G++Y +V + FVL+YK++ + NFAQG  +L  A + +  L    +PF
Sbjct: 4   ELLIQLIINGLIVGLLYGVVGMCFVLVYKSTQIVNFAQGEFLLVGAWVCWAFLTYFQLPF 63

Query: 61  WLAFLISLAAMLLIAVAVERVVLRPLINRSPITLFMATLGLSYVIEGFAQALWGAQVHGL 120
           ++ FL +L  M +  V ++ +VLRP+I    I++ M T+GLS   +   + ++G      
Sbjct: 64  FVGFLFTLCFMAVFGVLLQMIVLRPMIGEPIISVIMVTIGLSIFFQSLTKWIFGVSPQSY 123

Query: 121 ELGISDEPLELGGMLLSQFDIFAAVTAAFLVLLLSWLFNKTRLGLSLRAVADDPLAALAV 180
                 + + + G+ +    + + V A  ++      F  ++ GL++RA A D   A ++
Sbjct: 124 PQVFDTQSIAIFGLNIELAYLMSTVIAILIMAAFFLFFKYSKHGLAMRATAFDQQVAQSL 183

Query: 181 GIRLQRVWVVVWAVAGFVGLVAGLLWGARLGVQFSLSLVVLKALPVLIIGGFTSISGAIV 240
           GI +++V+ + W +A  V   AG++ G   GV  SLS + +K  P +I+GG  SI GAIV
Sbjct: 184 GISVKQVFAMSWGIAATVSATAGVVIGMVNGVSDSLSTIGIKVFPAVILGGLDSIVGAIV 243

Query: 241 GGLIIGASEKLAEVYLGPFIGSG-IENWFPYVLALVFLLVRPAGLFGERAIERV 293
           GG++IG  E +AE +   ++  G + +  P+ + LV L  +P GLFG R IER+
Sbjct: 244 GGVVIGVLENIAEFFDSQWLHIGNMYDIAPFYVLLVILWFKPYGLFGTRDIERI 297