Pairwise Alignments

Query, 355 a.a., Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) from Pseudomonas fluorescens FW300-N2E2

Subject, 373 a.a., inner-membrane translocator (NCBI) from Rhodospirillum rubrum S1H

 Score =  223 bits (567), Expect = 8e-63
 Identities = 138/371 (37%), Positives = 204/371 (54%), Gaps = 23/371 (6%)

Query: 4   REAGQFNTRYAQDRRVFALRQDRHGLAALL--LFAFVVVPW------------LGNDYWF 49
           R  G F T Y  D ++F     R  +   L  L+  V++P             L  D + 
Sbjct: 7   RPCGDFRTSYRADTKIFDTPTSRWAMVGFLCALYGLVILPQAFPPLASLPVLRLFADGYA 66

Query: 50  SAILIPFLVLSLAGLGLNLLTGYAGQLSLGSAAFMAVGAFATYNLEVRVAGLPLVVSIAL 109
            ++ I     ++A LGLN+L G+ GQ+SLG AAF  VGAF++  L  RV GLP++V I L
Sbjct: 67  LSLGIQVCYYAIAALGLNILVGFTGQISLGHAAFFGVGAFSSAWLNTRV-GLPVLVCIPL 125

Query: 110 GGLTAALVAVLFGLPSLRIKGFYLLVSTLAAQFFVTWALTRFSWFSNNSASGVISAPRLD 169
            GL +A   +LFG P+ RIKG YL ++TLAAQF +     R  WF+  S+  +   P L 
Sbjct: 126 AGLMSAAAGLLFGAPAARIKGLYLAIATLAAQFIIEDLFVRMDWFTGGSSGAMADTPMLG 185

Query: 170 VFGINLDAPAGRYLLTLSVVVALFWLGKNLVRSELGRNWMAVRDMDTAAAVIGIALAKTK 229
            F  + D  A  +LL+LS  + LF +  NL+RS  GR ++A+RD   +A V+GIAL + +
Sbjct: 186 SFAFDND--ARYFLLSLSFTIVLFVMAANLMRSRDGRAFVALRDHYLSAEVMGIALTRYR 243

Query: 230 LLAFAISGFFLGVAGALWAFAYLGTVEPHGFDLNRSFQILFIIIIGGLGSLLGNFLGAAF 289
           +++F I+ F+ G+ GAL+   YL  V    F +  S Q L +IIIGGLGS++G  LG  F
Sbjct: 244 VMSFGIAAFYAGIGGALYGH-YLMFVSAEAFTILLSIQFLGMIIIGGLGSVMGAMLGTIF 302

Query: 290 IVLFPVLLSNLVSLLP-----GGLVDAGQVENLQKMIFGALIILFLIKEPEGLARLWQRF 344
           +V  P ++  +++ L              +   ++M  GA IILFLI EP+GLA  W+  
Sbjct: 303 MVALPEVMGAVIAALQTTQWGNRPAVINGLPFFREMAIGAAIILFLIFEPDGLAHRWRLI 362

Query: 345 RQRARLWPLRY 355
           +   +L+P  +
Sbjct: 363 KTYWKLYPFSH 373