Pairwise Alignments

Query, 355 a.a., Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) from Pseudomonas fluorescens FW300-N2E2

Subject, 357 a.a., inner-membrane translocator (RefSeq) from Shewanella loihica PV-4

 Score =  232 bits (591), Expect = 1e-65
 Identities = 141/357 (39%), Positives = 200/357 (56%), Gaps = 11/357 (3%)

Query: 4   REAGQFNTRYAQDRRVFALRQDRHGLAALLLFAFVVVPWLGNDYWFSAILIPFLVLSLAG 63
           R  G F T Y  D  +F  +  R  L   L+ A      L  D +F  + I    L +A 
Sbjct: 7   RPCGDFRTSYKADNTIFETKTIR--LVTCLVIALACAAPLVLDGYFLTLFIQISYLGIAA 64

Query: 64  LGLNLLTGYAGQLSLGSAAFMAVGAFATYNLEVRVAGLPLVVSIALGGLTAALVAVLFGL 123
           LGLN+L G+ GQ+SLG  AF   GAFA+  L      +P+V  I L G     V ++FG+
Sbjct: 65  LGLNILVGFTGQISLGHGAFFGFGAFASAWLNTSF-NIPVVFCIPLAGFLTMGVGMMFGM 123

Query: 124 PSLRIKGFYLLVSTLAAQFFVTWALTRFSWFSNNSASGVISAPRLDVFGINLDAPAGRYL 183
           P+ RIKG YL ++TLAAQF +     R  WFS  S SG ++AP + +FG + D     Y 
Sbjct: 124 PAARIKGLYLAIATLAAQFIIQDFFGRAEWFSGGS-SGAMAAP-VSLFGFDFDTDMSFYF 181

Query: 184 LTLSVVVALFWLGKNLVRSELGRNWMAVRDMDTAAAVIGIALAKTKLLAFAISGFFLGVA 243
           + L  +V ++  G NL+RS  GR ++AVRD   +A ++G+ L K +LL+F IS F+ G+ 
Sbjct: 182 IALFALVFMYIWGCNLMRSRDGRAFVAVRDHYLSAEIMGVKLNKYRLLSFGISSFYAGIG 241

Query: 244 GALWAFAYLGTVEPHGFDLNRSFQILFIIIIGGLGSLLGNFLGAAFIVLFPVLLSNLVSL 303
           GAL+A  YLG V   GF +  S Q L ++IIGGLGS+ G  +G  F+VL P +L  +V L
Sbjct: 242 GALYAH-YLGYVSSEGFTILMSIQFLAMVIIGGLGSIKGTLMGVVFMVLLPEVLEGMVGL 300

Query: 304 LP----GGL-VDAGQVENLQKMIFGALIILFLIKEPEGLARLWQRFRQRARLWPLRY 355
           +     G L +    +  +++M  G +IILFLI EPEGLA  W + +   + +P  Y
Sbjct: 301 MKYTDYGNLPMVTDGLAYIKEMAIGLVIILFLIFEPEGLAHRWGQIKNYWKCYPFAY 357