Pairwise Alignments

Query, 355 a.a., Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) from Pseudomonas fluorescens FW300-N2E2

Subject, 407 a.a., proline/arginine ABC transporter, permease component (from data) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  153 bits (386), Expect = 9e-42
 Identities = 111/314 (35%), Positives = 163/314 (51%), Gaps = 27/314 (8%)

Query: 29  LAALLLFAFVVVPWLGNDYWFSAILIPFLVLSLAGLGLNLLTGYAGQLSLGSAAFMAVGA 88
           LA L++FA  V+P L + Y  + I+I  L+  + GLGLN++ G +GQL LG  AF AVGA
Sbjct: 94  LAVLVVFA--VLPMLVSTYQTN-IMISALLYVMLGLGLNIVVGLSGQLVLGYVAFYAVGA 150

Query: 89  FATYNLEVRVAGLPLVVSIALGGLTAALVAVLFGLPSLRIKGFYLLVSTLAAQFFVTWAL 148
           +A Y L     GL     + +GG  AA+  +L G P LR+KG YL + TL     V   L
Sbjct: 151 YA-YALLNADFGLGFWTVLPIGGALAAVFGILLGFPVLRLKGDYLAIVTLGFGEIVRLVL 209

Query: 149 TRFSWFS-NNSASGVISAPRLDVFGINLDAPAGR----YLLTLSVVVALFWLGKNLVRSE 203
              +W S     SG+    R  +FG+ L          YL+  +V+  +F +G+ L  S 
Sbjct: 210 E--NWGSVTRGPSGISKIARPGLFGMELSVSEATTYIYYLILAAVIFTIFAVGR-LKDSR 266

Query: 204 LGRNWMAVRDMDTAAAVIGIALAKTKLLAFAISGFFLGVAGALWAFAYLGTVEPHGFDLN 263
           +GR W A+R+ + A   +GI L  TKL AFA+   + G AG ++A A    + P  F   
Sbjct: 267 IGRAWQALREDEIACEAMGIDLTTTKLTAFALGACWAGFAGVIFA-AKTTFINPASFTFL 325

Query: 264 RSFQILFIIIIGGLGSLLGNFLGAAFIVLFPVLLSNLVSLLPGGLVDAGQVENLQKMIFG 323
            S  IL ++++GG+GS LG  LGA  ++L P  L                    + +IFG
Sbjct: 326 ESAMILAMVVLGGMGSTLGVVLGALVLILLPEYLR--------------AFSEYRMLIFG 371

Query: 324 ALIILFLIKEPEGL 337
           A ++L ++  P+GL
Sbjct: 372 AAMVLMMVFRPQGL 385