Pairwise Alignments

Query, 367 a.a., Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) from Pseudomonas fluorescens FW300-N2E2

Subject, 366 a.a., extracellular solute-binding protein (RefSeq) from Shewanella loihica PV-4

 Score =  346 bits (887), Expect = e-100
 Identities = 172/365 (47%), Positives = 244/365 (66%), Gaps = 1/365 (0%)

Query: 1   MSLFLRNTLLGAVVSMLVSGASLAEERTVRIYNWIEYLPPEILKSFEEETGIRPIYDVFD 60
           M L  + T L  V + + + + ++ E  VR+YNW +Y+  + L +FE+ETGI+ IYDVFD
Sbjct: 1   MKLLKKMTTLALVTAGVFTSSVVSAEEVVRVYNWSDYIAEDTLANFEKETGIKVIYDVFD 60

Query: 61  SVETLESKLLTGNSGYDVVYPSSSNVSHLIAAGAVQPLDRSQLPNWQHLDPEFMKTLEAI 120
           S E +E+KLL+G SGYD+V PS++ ++  I AGA Q LD+SQL N ++L+PE MK LE  
Sbjct: 61  SNEVVEAKLLSGRSGYDIVVPSNNFLAKQIKAGAFQKLDQSQLTNHKNLNPELMKQLET- 119

Query: 121 GDEGNRYAAPYLWGTTLIGYNVDKVRQVLGADVQMNTWDIIFKEENMAKLASCGVGFLDA 180
            D  N +A PYLWGTT IGYN  KV+QVLG D  +++ ++IF  +   K+A CG   LD+
Sbjct: 120 ADPRNEHAVPYLWGTTGIGYNEAKVKQVLGEDAPVDSLELIFNPKYAEKIAKCGFSLLDS 179

Query: 181 ANEIVPIALHYKGLDPNSQKREDYPQAQAAMHTVRPYITYFNSSRYGMDLANGEICVGVG 240
           A+E++P+A+ Y GLDPNS K EDY +A   M  +RP++TYF+SSRY  DLANG+ICV  G
Sbjct: 180 ADEMLPMAMIYLGLDPNSTKSEDYAKAGEVMAKIRPFVTYFHSSRYITDLANGDICVAFG 239

Query: 241 WSGGVALATRLADAAGKGVKVAMALPKEGAPMWADVMMVPTNAPHTAEAYAFINYILRPD 300
           +SG V  A   A+ A  G  +  A+PKEG+ +W D++ +P +A +   A+ FINY+LRP+
Sbjct: 240 YSGDVFQAAARAEEAENGNVIGYAIPKEGSNLWFDMLAIPADAKNVKNAHTFINYLLRPE 299

Query: 301 VIARISNKIGYPNPNKDATALVDAEIRSNPAMYIPDEARKTLFMLEPVPAAVERIRTRTW 360
           VIA I+N + Y NPN  A  LVD EIR++ A+Y   E    L++ +  P   +R  TR W
Sbjct: 300 VIAPITNYVAYANPNVPAQELVDEEIRNDAAIYPTPEVLSRLYVADVRPMKAQRAMTRVW 359

Query: 361 TAIKT 365
           T +K+
Sbjct: 360 TKVKS 364