Pairwise Alignments

Query, 367 a.a., Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) from Pseudomonas fluorescens FW300-N2E2

Subject, 367 a.a., polyamine ABC transporter, periplasmic polyamine-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  352 bits (903), Expect = e-102
 Identities = 174/368 (47%), Positives = 249/368 (67%), Gaps = 2/368 (0%)

Query: 1   MSLFLRNTLLGAVVSMLVSGASLAEERTVRIYNWIEYLPPEILKSFEEETGIRPIYDVFD 60
           M LF + T L  V +  ++  ++  E  VR+YNW +Y+  + L++F++ETGIR IYDVFD
Sbjct: 1   MKLFNKMTTLALVTAGTLASVAVQAEEVVRMYNWSDYIAEDTLENFKKETGIRVIYDVFD 60

Query: 61  SVETLESKLLTGNSGYDVVYPSSSNVSHLIAAGAVQPLDRSQLPNWQHLDPEFMKTLEAI 120
           S E +E+KLL+G SGYD+V PS+  ++  I AGA +PLDRS+L N+++L+ + MK LE  
Sbjct: 61  SNEVVEAKLLSGRSGYDIVVPSNHFLAKQIKAGAFKPLDRSKLTNFKNLNADLMKLLEK- 119

Query: 121 GDEGNRYAAPYLWGTTLIGYNVDKVRQVLGADVQ-MNTWDIIFKEENMAKLASCGVGFLD 179
            D GN+YA PYLWGT  IGYN++KV+  +G D    N+ ++IF  +   K++ CG   LD
Sbjct: 120 ADPGNQYAVPYLWGTNGIGYNINKVKAAVGEDAPPFNSMELIFNPKYAEKISKCGFAMLD 179

Query: 180 AANEIVPIALHYKGLDPNSQKREDYPQAQAAMHTVRPYITYFNSSRYGMDLANGEICVGV 239
           +A+++VP A+ Y GLDPNS K EDY +A   +  +RPY+TYF+SSRY  DLANG+ICV  
Sbjct: 180 SADDMVPQAMIYLGLDPNSTKAEDYEKAGELLEKIRPYVTYFHSSRYISDLANGDICVAY 239

Query: 240 GWSGGVALATRLADAAGKGVKVAMALPKEGAPMWADVMMVPTNAPHTAEAYAFINYILRP 299
           G+SG V  A   AD AG G K+  ++PKEGA +W D++ +P +A +   A+  INY+LRP
Sbjct: 240 GFSGDVFQAAARADEAGNGNKIGYSIPKEGANLWFDMLAIPADATNVENAHKLINYLLRP 299

Query: 300 DVIARISNKIGYPNPNKDATALVDAEIRSNPAMYIPDEARKTLFMLEPVPAAVERIRTRT 359
           +VIA ISN + Y NPN  A  LVD  IR++PA+Y P E    L++ E  P  ++R+ TR 
Sbjct: 300 EVIAPISNYVAYANPNDLAQPLVDEAIRNDPAIYPPKEVLDKLYIGEIRPLKIQRVLTRV 359

Query: 360 WTAIKTNR 367
           WT +K+ +
Sbjct: 360 WTKVKSGQ 367