Pairwise Alignments

Query, 449 a.a., Type I secretion outer membrane protein, TolC precursor from Pseudomonas fluorescens FW300-N2E2

Subject, 435 a.a., outer membrane protein TolC (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  144 bits (364), Expect = 4e-39
 Identities = 111/409 (27%), Positives = 186/409 (45%), Gaps = 17/409 (4%)

Query: 34  LTAAYDASRLNDPTVQSAAHAFEASRHEEDIGRGGLYPQVSLTSRYGYGGRTDGGDDSTY 93
           L   Y  +  NDP V  A     A   + +  R  L P +S    Y      D  DDS+ 
Sbjct: 26  LLQIYQQALTNDPLVLQAQAQRNALFEKIEQNRAPLLPTISANVGYDKAWN-DPRDDSSG 84

Query: 94  VNSNDYQANNVTLAAQQPLYDKARWAAYQEGKARGQLGTQVFDVAGQTLYDRVAKGYFDV 153
           +  +        L   Q +YD + W      +         +  A Q L  RV K YFDV
Sbjct: 85  LTGS--------LKLNQVIYDHSAWVGLSLAEKAASQADSTYASALQNLISRVTKAYFDV 136

Query: 154 ARAENEIKLIQQQKAAIQGLVVQSKKLYEGGQGAITDIDEAQARLDLVQAQEAEAQ---A 210
             A++  +    +K AI+  + Q+K+ +  G  AITD+ EAQA+ DL  A E  A+   A
Sbjct: 137 LTAKDNYEFQGAEKRAIERQLEQTKQRFAVGLTAITDVHEAQAQYDLASASEILAENTLA 196

Query: 211 RRVAALRALSGRASVPIDDILPMREELAAGSPIPPEQDLPYWTAIAREASPELAARLAAV 270
               ALR ++G     ++ +   R   +A +P P       W  IA   S +L  +    
Sbjct: 197 NSYEALREITGIDHKALNVLDTNR--FSAVTPAPSSST--DWLKIAETNSVDLMTQRIGK 252

Query: 271 KVAEAQADSQRAGHYPTLSLTTQLTRR-ETRQYQELDPRQDTYYVGVQLDIPLYRGGAVR 329
            +A+      +AGH P+LSL     +  E +     +P  D   VG+ L +P++ G  V 
Sbjct: 253 DIAQETISLYKAGHMPSLSLNAGYAKGLEQKLGDASEPDFDNMSVGINLSVPIFEGFKVS 312

Query: 330 ASVAKAEAQLAGAQSDYDVQRQQLAEDIEADYLGVVAGFAKSKAMQRAVESNQRALTSTE 389
           + V +A+ Q   A    +   + + +++  +Y  V A  +  +A +++V S++ AL +T+
Sbjct: 313 SQVKEAQFQYVQASERLEQTYRGVVKNVRNNYNNVGASISSIRAYEQSVISSESALKATQ 372

Query: 390 KGFQGGVRSTVDILDAQQRLFQARRDLLNTKLDMLQSYVSLHTHTGQMN 438
            GF+ G R+ VD+L+  + L+ ++R L + +   + S V+L    G +N
Sbjct: 373 AGFEVGTRTIVDVLNRTRDLYDSKRKLSDARYSYINSIVALKQAAGTLN 421



 Score = 32.0 bits (71), Expect = 4e-05
 Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 9/141 (6%)

Query: 306 DPRQDTYYV--GVQLDIPLYRGGAVRASVAKAEAQLAGAQSDYDVQRQQLAEDIEADYLG 363
           DPR D+  +   ++L+  +Y   A    ++ AE   + A S Y    Q L   +   Y  
Sbjct: 77  DPRDDSSGLTGSLKLNQVIYDHSAW-VGLSLAEKAASQADSTYASALQNLISRVTKAYFD 135

Query: 364 VVAG---FAKSKAMQRAVESNQRALTSTEKGFQGGVRSTVDILDAQQRLFQARRDLLNTK 420
           V+     +    A +RA+E   R L  T++ F  G+ +  D+ +AQ +   A    +  +
Sbjct: 136 VLTAKDNYEFQGAEKRAIE---RQLEQTKQRFAVGLTAITDVHEAQAQYDLASASEILAE 192

Query: 421 LDMLQSYVSLHTHTGQMNRAV 441
             +  SY +L   TG  ++A+
Sbjct: 193 NTLANSYEALREITGIDHKAL 213