Pairwise Alignments

Query, 395 a.a., hypothetical protein from Pseudomonas fluorescens FW300-N2E2

Subject, 388 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  330 bits (845), Expect = 6e-95
 Identities = 179/383 (46%), Positives = 246/383 (64%), Gaps = 13/383 (3%)

Query: 22  RMLAIDALRGFVMLLMLVDHVRETFLLHRQVTDPIDALSVTPDLYFTRLLSTLCAPVFIF 81
           R+ +ID +RG VML+ML+DHVRE F LH QV+DP+D  + T DL+ +R  +  CAPVF+F
Sbjct: 10  RINSIDMMRGLVMLIMLLDHVREQFFLHMQVSDPMDLSTTTWDLFVSRFAAHFCAPVFVF 69

Query: 82  LTGLSAWLYSQKHTAGQTSL--FLLKRGLFLVFLELTFVCFAWNAEFPPKTLWLQVIWCI 139
           LTG+SAWLY+ +      S+  FLLKRGLFL+ LE+  + F+W   +   TLWLQVIW I
Sbjct: 70  LTGVSAWLYANRGHGEPRSVRVFLLKRGLFLIALEVLVINFSWMGNY--HTLWLQVIWVI 127

Query: 140 GICMIVLAALLHLKRRWLILLGVAIVAGHNLLDGVVPGPDSPFFVPWSILHQRAFIDITE 199
           G+ M+ LAAL+ L R W+ LLG+ IV GHNLL  +   PD+  +  W+ILH R ++    
Sbjct: 128 GLSMLALAALIKLPRLWMALLGLLIVFGHNLLSPIHFEPDTWGYSLWTILHDRGYLIAEG 187

Query: 200 FTRARTTYPVLPWIGVILLGWAIGPWFGKDVEPAVRLRRLFKMGLGLLLAFVLIRYLNVY 259
             + + +YP+LPWIGVILLG+  GP F +  E   R +RL  +G+G    F L+R  N+Y
Sbjct: 188 DLKLKVSYPLLPWIGVILLGYVAGPLFSRKFEAWQRQQRLMLLGVGCFAFFCLLRGFNLY 247

Query: 260 GDK-PWLQTGDAL-RTFMSFMSATKYPPSLMFLMPTLGIGLMLLALFEKAQDRGAI---- 313
           G+  PW Q G+++ +T MS  + TKYPPSL FL+ TLG     L LFE+    G++    
Sbjct: 248 GETLPW-QVGESIGQTLMSVFNLTKYPPSLSFLLVTLGGMFCGLVLFERYFAAGSLFSWI 306

Query: 314 -ALLAIYGGAPMFFYLLHLYVLKALYLTAVAIWGTNQGTYFGFDDLPMVWLWSVLLGVVL 372
              LA++G  PMFFY+LHLYVL  LYL A  ++G N G  FG   +  VWL S++L  +L
Sbjct: 307 GQKLAVFGSVPMFFYILHLYVLLLLYLVAKGLFGANHGELFGVAHMGWVWLISLVLIPLL 366

Query: 373 FFPTRWFAGLKQRRRDIAILKYL 395
           ++P  WF+  K + +  A LKYL
Sbjct: 367 YYPVSWFSRYKSQSQQ-AWLKYL 388