Pairwise Alignments

Query, 591 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas fluorescens FW300-N2E2

Subject, 450 a.a., two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  253 bits (647), Expect = 9e-72
 Identities = 150/332 (45%), Positives = 197/332 (59%), Gaps = 29/332 (8%)

Query: 255 LIGASAAFNAATQALRRVALTPATVLVSGESGVGKEMFARQLHQLSRRRDGPFIALNCAA 314
           L+G SA      Q ++RV+ T ATVL+ GESG GKE+ AR L+QLS R   PF+A+NC A
Sbjct: 146 LVGRSALMQKVYQRVQRVSATDATVLIGGESGTGKELAARALYQLSARSHKPFVAINCGA 205

Query: 315 IPDNLIEAELFGVERGAYTGATHSRPGRFERAHGGTLFLDEITCLSLAGQSKLLRALQER 374
           IP++L EAELFG E+GAYTGA   + G+ E A GGT+FLDEI  L L  Q+KLLR LQE 
Sbjct: 206 IPESLAEAELFGAEKGAYTGANTQKIGKLEAADGGTVFLDEIGELPLLQQTKLLRFLQEG 265

Query: 375 EIERIGGGHGIKVDVRVVAATNIDLRKAVADGAFREDLFYRLNVYPIALPPLRERRDDIP 434
            I R+G    IK+DVRV+AAT+ DL++ VA+G FREDL+YRLNV PI +P LRER +DI 
Sbjct: 266 VISRLGQNSEIKLDVRVIAATHRDLQQEVAEGRFREDLYYRLNVVPIHMPALRERPEDIG 325

Query: 435 LLINAFLKRFCQEYGRTPMGLTMRALKVLLRYDFPGNVRELQNLIERGLIASEEGQAIDL 494
            L+  FLK    +YG     L+   LK LL + +PGNVREL N IER ++  +E + +  
Sbjct: 326 RLVEHFLKLHANQYGMEVPKLSRDTLKSLLDHSWPGNVRELANRIERFVLLGDEEEMV-- 383

Query: 495 VHLFRNEQLPVDAYSVDLHGGLSPMGTAANDPAEKPALLQSLSQLDSDFSIDGLESRLIN 554
                 ++L      +D    + P      +  EK  L Q+L + +              
Sbjct: 384 ------QELGAAPQPLDTKRFVLPEAGIEWESFEKDCLRQALDRFE-------------- 423

Query: 555 EALQLSSGNLAAAARSLGLSRAQFAYRLKKHQ 586
                  GN   AA+ LGLS   F YRL+K+Q
Sbjct: 424 -------GNRTKAAKCLGLSYKAFLYRLEKYQ 448