Pairwise Alignments

Query, 591 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas fluorescens FW300-N2E2

Subject, 477 a.a., sigma-54 dependent trancsriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  245 bits (625), Expect = 3e-69
 Identities = 146/341 (42%), Positives = 202/341 (59%), Gaps = 12/341 (3%)

Query: 255 LIGASAAFNAATQALRRVALTPATVLVSGESGVGKEMFARQLHQLSRRRDGPFIALNCAA 314
           L+G S         + +VA + ATVLV G+SG GKE+ AR +H +S RRDGPFI +NC A
Sbjct: 134 LVGRSEGIAQVRHLINQVAGSDATVLVLGQSGTGKEVVARNIHYISDRRDGPFIPVNCGA 193

Query: 315 IPDNLIEAELFGVERGAYTGATHSRPGRFERAHGGTLFLDEITCLSLAGQSKLLRALQER 374
           IP  L+E+ELFG E+G++TGA  +R GRFE A GGTLFLDEI  + L  Q KLLR LQER
Sbjct: 194 IPPELLESELFGHEKGSFTGAISARKGRFELAEGGTLFLDEIGDMPLQMQVKLLRVLQER 253

Query: 375 EIERIGGGHGIKVDVRVVAATNIDLRKAVADGAFREDLFYRLNVYPIALPPLRERRDDIP 434
             ER+GG   I  +VRV+AAT+ +L   +A+G FREDLFYRLNV+P+ +P L ER+DDIP
Sbjct: 254 VFERVGGSKPIHTNVRVIAATHRELETMIANGEFREDLFYRLNVFPVEMPALCERKDDIP 313

Query: 435 LLINAFLKRFCQEYGRTPMGLTMRALKVLLRYDFPGNVRELQNLIERGLIASEEGQAIDL 494
           LL+   + R   E GR  +  T RA++ L  + + GNVREL NL+ER L     G  +D+
Sbjct: 314 LLLQELVSRVYNE-GRGKVRFTQRAIESLKEHSWSGNVRELSNLVER-LTILYPGGLVDV 371

Query: 495 VHL-FRNEQLPVDAYSVDLHGGLSPMGTAANDPAEKPALLQSLSQLDSDFSIDG------ 547
             L  +   + V  Y V +          A+  +++ A+    S+  S+   +G      
Sbjct: 372 NDLPLKYRHIDVPEYQVQVSEEELERDALASIFSDEVAVDIPESRFPSELPPEGVNLKDL 431

Query: 548 ---LESRLINEALQLSSGNLAAAARSLGLSRAQFAYRLKKH 585
              LE  +I +AL      +A AA  LG+ R     +++K+
Sbjct: 432 LAELEIDMIRQALDQQDNVVARAAEMLGIRRTTLVEKMRKY 472