Pairwise Alignments

Query, 591 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas fluorescens FW300-N2E2

Subject, 488 a.a., sigma-54 dependent transcriptional regulator/sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  258 bits (659), Expect = 4e-73
 Identities = 152/358 (42%), Positives = 213/358 (59%), Gaps = 15/358 (4%)

Query: 218 EQDLNYLNASPPAVVARTDSQSDSVAGTAPLPDSEQPLIGASAAFNAATQALRRVALTPA 277
           EQ L +  A   A+  +  S++  +         +  + G SA      Q L  VA T +
Sbjct: 140 EQSLRHALAQVQALSEQLASENHYLQAELADKTGDVDISGGSAVIRHMIQQLHMVANTDS 199

Query: 278 TVLVSGESGVGKEMFARQLHQLSRRRDGPFIALNCAAIPDNLIEAELFGVERGAYTGATH 337
           TVL+ GE+G GKE+ AR LHQLSRR+D P I++NCAA   +L+E+ELFG E+GA+TGAT 
Sbjct: 200 TVLICGENGTGKELVARNLHQLSRRKDKPMISVNCAAFSASLLESELFGHEKGAFTGATS 259

Query: 338 SRPGRFERAHGGTLFLDEITCLSLAGQSKLLRALQEREIERIGGGHGIKVDVRVVAATNI 397
            R GRFE AH GTLFLDE+  LSL  QSKLLR +QE+  ER+GG   IKVD+R+VAA++ 
Sbjct: 260 QRKGRFELAHQGTLFLDEVAELSLEAQSKLLRVIQEQSFERLGGSETIKVDIRLVAASHH 319

Query: 398 DLRKAVADGAFREDLFYRLNVYPIALPPLRERRDDIPLLINAFLKRFCQEYGRTPMGLTM 457
           DL K V  G FR DL+YRLNV+PI +PPLR R  D+P L++  L    ++ G+   G++ 
Sbjct: 320 DLLKRVEQGLFRMDLYYRLNVFPIQVPPLRARLGDMPELVSHILHTLNRKLGKKIRGVSQ 379

Query: 458 RALKVLLRYDFPGNVRELQNLIERGLIASEEGQAIDLVHLFRNEQLPVDAYSVDLHGGLS 517
           + LK L+ Y +PGNVRELQN++ER  I S+     D++H+       +  + +      S
Sbjct: 380 KGLKKLMTYSWPGNVRELQNILEREAILSQ----TDILHIH-----AMPTHHLQTQTAAS 430

Query: 518 PMGTAANDPAEKPALLQSLSQLDSDFSIDGLESRLINEALQLSSGNLAAAARSLGLSR 575
           P+ T A   AE   + Q+L QL  ++ I G         L +    L +  + LG++R
Sbjct: 431 PLQTLAE--AEAQHIEQTLKQL--NWRISGANGAA--NVLGVPPSTLRSRMKKLGITR 482