Pairwise Alignments

Query, 303 a.a., Cys regulon transcriptional activator CysB from Pseudomonas fluorescens FW300-N2E2

Subject, 293 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 99.4 bits (246), Expect = 9e-26
 Identities = 67/239 (28%), Positives = 121/239 (50%), Gaps = 5/239 (2%)

Query: 6   LRQLKYFVTTVECGSVAEASRKLYIAQPSIASAIKGLEDSFGVQLLIR---HHAQGVSLT 62
           +RQLK+       GS   A++KL +AQP+++ +IK LE S GV L+ R    H + ++LT
Sbjct: 3   IRQLKHLDALAITGSFTAAAKKLNMAQPALSQSIKRLELSLGVTLINRTSNKHDKHLALT 62

Query: 63  PGGARFYRKAQELLRMAREFEQNALADNDVVSGQIDIGCFETVAPLYLPRLIAGFRERFP 122
             G   ++ A  +L+  ++ E    A  ++ SG++ I     +   YLP  +  FR ++P
Sbjct: 63  AEGLVLHQHATLILKQIKQAEAQIRAMANLTSGEVRIAVPGMLGSFYLPSRLMAFRHQYP 122

Query: 123 GVEIRVQDGEQQELVQGLTGGRFDLAIFYEHDLDSTIETEALTAPQRPYALLPVGHRFAD 182
            +++ + +G  ++ ++ L     D+AI    DL    +++ L   Q   A +   H  A+
Sbjct: 123 ELKLSLFEGGTRDALRMLQQEEVDIAIITAQDLQPDFDSQLLIREQMVIA-MGAEHPLAE 181

Query: 183 QAQVSLRDLALEPMILLDV-QPSRTYFVSIFEELGLTPNIVFSSPSIEMVRGMVGQSFG 240
              VSL D     +++       R + +S  ++LG  PNI F +  I +++ +V Q FG
Sbjct: 182 LPAVSLNDFFDHELVMFKTGYFHREWILSQAKDLGKKPNIAFETNLINLIKQIVSQGFG 240