Pairwise Alignments

Query, 226 a.a., AraC family transcription regulator from Pseudomonas fluorescens FW300-N2E2

Subject, 252 a.a., transcriptional regulator, AraC/XylS family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  103 bits (257), Expect = 3e-27
 Identities = 66/226 (29%), Positives = 106/226 (46%), Gaps = 8/226 (3%)

Query: 1   LQWDDREMRAGPQHLILMPAGRELGISNFPGPHGHYIADAVTFPLSTLRNFSSRYSQQIM 60
           L W D  +      L+L+PAG  +   N P   G Y A  +  P           + + M
Sbjct: 35  LLWQDDALSVNADQLLLLPAGTHISFVNRP-MGGRYRAVQLLLPYELPSGVILAPTDRTM 93

Query: 61  SRRGALKTDLCVPLDRHTTQAWNQLLASINANAPDALRTLYGEAVLLSLCLGGQIGPLLM 120
           S+           + R    AWN LL S+    P +++  Y  A+LLSL     +  L  
Sbjct: 94  SKPTQA-------ISRSVDFAWNALLHSLTLALPTSVQMHYLAALLLSLPQQSSVNWLYG 146

Query: 121 GRNDPICERVQQMVMGSPERDWTVASVAQQLNLGESTLRRQLANEGDSFRSILEGVRLAT 180
            +   + + V  ++   P   W    +A++L++  ++LRR+L  E  SFR +L  VRL  
Sbjct: 147 HKQSSVTQAVLAILSQHPSAQWQQEQLAEKLHMSSASLRRKLVQEDTSFRQLLAEVRLCQ 206

Query: 181 ALQWLQTTSRPIGEIAGACGYASASRFAVRFRSRYGLSPRELRATI 226
            L  LQ +S  + ++A +CGY SA +F+ RF+  +GL+P   R T+
Sbjct: 207 GLALLQNSSDSVLQVALSCGYLSAEKFSARFKQAFGLTPAAYRRTL 252