Pairwise Alignments

Query, 323 a.a., Methyl-accepting chemotaxis protein from Pseudomonas fluorescens FW300-N2E2

Subject, 491 a.a., chemotaxis sensory transducer (NCBI) from Rhodospirillum rubrum S1H

 Score =  106 bits (264), Expect = 1e-27
 Identities = 82/270 (30%), Positives = 115/270 (42%), Gaps = 59/270 (21%)

Query: 103 LQQQRQDAQIWELLQSTLTEGCWDITVVNGDLQHPASGMRFSSQFRSLLGYGPD-DLPDG 161
           + +Q   A+   +L      G WD  + NGD  HP S   +S +FR LLG+  + + PD 
Sbjct: 159 VHEQADMAERMRILSHHAGVGLWDAVLHNGDAMHPQSRWTWSPEFRHLLGFESEAEFPDV 218

Query: 162 WDAQVGITHPDDLPKIMAIFDREILGSQGSGEYVFEYRMRHKTRDYIWCRERGRAVRDSH 221
             +     HPDD+    A F   +    G   Y   YR + +   Y W R  G  +RD  
Sbjct: 219 VRSWSDRLHPDDVGPTFAAFGALLTDRSGRTGYDVTYRCKVRNGSYRWFRATGGCLRDRA 278

Query: 222 GQLVRVIGAVRDISDERSAQSTHQRMLEQNQV---------------------------- 253
           G  +R  G++ ++     A+ T QR LE ++V                            
Sbjct: 279 GNPLRACGSLINVDAVMRAEET-QRRLENDKVEILSRVGQALAGIESDIDSVIDAAQAAS 337

Query: 254 ----------------------TYAQIATVVGVIKG-------IADQTNLLALNAAIEAA 284
                                 T  Q+A+    I+G       IA QTNLLALNAAIEAA
Sbjct: 338 GQAGQTREAAATGQDQILHLATTLEQMASATDQIRGLVNSIQQIAQQTNLLALNAAIEAA 397

Query: 285 RAGDVGRGFSVVADEVRKLAQSTRQATHQI 314
           RAG+ G GF+VVA EVR L+  T   +++I
Sbjct: 398 RAGEHGAGFNVVASEVRTLSTRTHSTSNEI 427



 Score = 60.8 bits (146), Expect = 6e-14
 Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 1/129 (0%)

Query: 110 AQIWELLQSTLTEGCWDITVVNGDLQHPASGMRFSSQFRSLLGYGPD-DLPDGWDAQVGI 168
           A++  +L      G WD  +  GD  H  S   +S++FR L+G+  + + P+   +    
Sbjct: 34  AELHAVLDGNAGVGLWDAVIHEGDPLHAQSRWTWSAEFRRLVGFKSETEFPNVVGSWADR 93

Query: 169 THPDDLPKIMAIFDREILGSQGSGEYVFEYRMRHKTRDYIWCRERGRAVRDSHGQLVRVI 228
            HP+D       F   +  + G   Y   YR++ +   Y W R  G  +RD+ G+ +R  
Sbjct: 94  LHPEDAASTFEAFGALLSDTTGRTGYDVTYRLKMRDGAYRWFRATGGCLRDAAGKPLRAC 153

Query: 229 GAVRDISDE 237
           G++ D+ ++
Sbjct: 154 GSLTDVHEQ 162