Pairwise Alignments

Query, 500 a.a., Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) from Pseudomonas fluorescens FW300-N2E2

Subject, 546 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  249 bits (636), Expect = 2e-70
 Identities = 150/394 (38%), Positives = 244/394 (61%), Gaps = 10/394 (2%)

Query: 113 QTVLKLNESLSSLQNEINELYAAEEI----RAKTSVDLVFAILGGVTLFALVLGGLISWI 168
           QT+    E   +L++E N+  A E +     A  +  ++  I+G  T+F +V+   ++++
Sbjct: 157 QTLEVAGEETMNLRHE-NDRAAQEMVLQSENAYKTAKMLSIIVGFSTIFFVVV---MAFL 212

Query: 169 IGRQIVIPLQQALQASERIANGDLTVELQSDR--ADELGHLLRSINNMAQRLRDVISQIG 226
           + RQI  P+   L+ +  ++ G+LT +L  +    DE G L  S N M   L  ++S++ 
Sbjct: 213 LIRQIQNPIMWLLKQTHEVSAGNLTNKLNMNAFARDEFGQLAESFNEMQDNLHMLVSEVS 272

Query: 227 DSSHRLAASASQLATITTQTQAGIDSQKSETDLVATAMTEMTTTVQEVARNSEDAAGAAK 286
           +S  +L+++A +++++   +   +++Q++E + +ATAM EM  TVQ+VARN+ DAA AA 
Sbjct: 273 NSIVQLSSAAEEISSVALHSSNNMETQQNELNQLATAMHEMQATVQDVARNTNDAANAAT 332

Query: 287 KADHEASNALEVSQQAVAQIETLAREVGMSAESMTCLHQESERIGGVLDVIKTVAGQTNL 346
           +A   A+   E    ++ +I+ +A  +  +A  +  L  +S  IG VL+VI+ +A QTNL
Sbjct: 333 QASDTATQGSETVNDSIVRIDKVAGAIEATAVVIRKLGDDSRNIGMVLEVIQGIAEQTNL 392

Query: 347 LALNAAIEAARAGEAGRGFAVVADEVRSLAQRTQQSSEEIESLIEGLQRIAEESSRMMQA 406
           LALNAAIEAARAGE GRGFAVVADEVR+LA+RTQ S+  I S+I  LQ  A E+   MQ 
Sbjct: 393 LALNAAIEAARAGEQGRGFAVVADEVRTLAKRTQDSTSHINSIISELQLRANEAEETMQQ 452

Query: 407 SVQQTQSTVTGVRNTGDALAAITQQVSDIQQMSMLIATAAEEQTAVAEEINRSVLNVRET 466
           S +    TV   R  G+++A I+  VS I QM++ IATA EEQ AV+EE+NR+V N+   
Sbjct: 453 SQEMMIETVCKAREAGESIAKISSSVSCISQMNIQIATATEEQGAVSEELNRNVANISGA 512

Query: 467 ADQSATASAEISVSSVELAQLGGDLQRLVRRFKV 500
           ++  AT + +++++  +L+ L   LQ +V++F +
Sbjct: 513 SEDVATGAKQMAMACNDLSHLATQLQDMVKKFHI 546



 Score = 38.9 bits (89), Expect = 5e-07
 Identities = 53/285 (18%), Positives = 106/285 (37%), Gaps = 44/285 (15%)

Query: 110 DVTQTVLKLNESLSSLQNEINELYAAEEIRAKTSVDLVFAILGGVTLFALVLGGLISWII 169
           +++   L  + ++ + QNE+N+L  A      T  D                       +
Sbjct: 284 EISSVALHSSNNMETQQNELNQLATAMHEMQATVQD-----------------------V 320

Query: 170 GRQIVIPLQQALQASERIANGDLTVELQSDRADELGHLLRSINNMAQRLRD--------- 220
            R        A QAS+    G  TV     R D++   + +   + ++L D         
Sbjct: 321 ARNTNDAANAATQASDTATQGSETVNDSIVRIDKVAGAIEATAVVIRKLGDDSRNIGMVL 380

Query: 221 -VISQIGDSSHRLAASASQLATITTQTQAGIDSQKSETDLVATAMTEMTTTVQEVARNSE 279
            VI  I + ++ LA +A+  A    +   G      E   +A    + T+ +  +    +
Sbjct: 381 EVIQGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAKRTQDSTSHINSIISELQ 440

Query: 280 DAAGAAKKADHEASNALEVSQQAVAQIETLAREVGMS----AESMTCLHQESERIGGVLD 335
             A       +EA   ++ SQ+ + +    ARE G S    + S++C+ Q + +I    +
Sbjct: 441 LRA-------NEAEETMQQSQEMMIETVCKAREAGESIAKISSSVSCISQMNIQIATATE 493

Query: 336 VIKTVAGQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTQ 380
               V+ + N    N +  +       +  A+  +++  LA + Q
Sbjct: 494 EQGAVSEELNRNVANISGASEDVATGAKQMAMACNDLSHLATQLQ 538