Pairwise Alignments

Query, 187 a.a., Transcriptional regulator, TetR family from Pseudomonas fluorescens FW300-N2E2

Subject, 205 a.a., transcriptional regulator, TetR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  103 bits (258), Expect = 2e-27
 Identities = 59/192 (30%), Positives = 104/192 (54%), Gaps = 11/192 (5%)

Query: 5   TSNETRDIILDVAEKLIYKSGIAATGMDLLVKTAGVSRKSVYRYFANKDDLIVAALRRRD 64
           T ++ R  ++  A KL Y   +   G++ +++ + +++K++Y +F +KD+L+ A +R RD
Sbjct: 11  TPSDKRQQLVTTAFKLFYFQSVHGVGINQILQESAIAKKTLYHHFVSKDELVKAVVRYRD 70

Query: 65  ERWMHWFSSEVDKAPTPTARLLSLFTVLKGWFDSE-----GFRGCAFINTSGETGDPQDP 119
           E +  W S  V+ +P     +  LF  L  WF+        FRGC FIN S E  +P  P
Sbjct: 71  ETFYQWLSERVNASPAGREGIRGLFRALDDWFNQRVPQLCEFRGCFFINVSAEFTEPSHP 130

Query: 120 VRQVAKMHKQKLLDYVTRLCVEQGVQNPDALARQLL----ILIDGAITVALVMGDHSAAD 175
           V Q+  +HKQ++   + R     G+  P+A  + L+    +L +GAI  A + G+  +A 
Sbjct: 131 VHQLCALHKQRVASLIERQVSALGL--PEAKTQYLVAAIGLLKEGAIVSAQLKGETQSAL 188

Query: 176 DAQDLLKKLLHA 187
            A  ++++LL A
Sbjct: 189 LALAVVEQLLDA 200