Pairwise Alignments

Query, 345 a.a., FIG054297: Transcriptional regulator, AraC family from Pseudomonas fluorescens FW300-N2E2

Subject, 383 a.a., transcriptional regulator, AraC family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  119 bits (297), Expect = 2e-31
 Identities = 105/365 (28%), Positives = 156/365 (42%), Gaps = 45/365 (12%)

Query: 22  AALIDLALSRDIDSHRLLRGTGLFHDDILAGQSRISPQQFLGLIDNSRRLLDASDSSFLF 81
           A+L+ L   RD+D  +LLRGTG+F  DI      ISP+Q   L+DN+       D SFL 
Sbjct: 19  ASLVGLFKQRDLDCDKLLRGTGIFITDIRKPDHLISPKQLARLLDNALAQWPNGDLSFLL 78

Query: 82  GQRLLPGHYGPASHALRHAQNLHQALQTLIDQQALLSP-LAAPRLLLDEHYAYLHWLDSC 140
           GQ   P   G  +  +  A+++ + +        L  P L   R   +  + +L  LD  
Sbjct: 79  GQLWFPSQSGVLTSGMFCARDVKELIYFWHKYHWLTQPWLQTWRWQGEHEWHFLLSLD-L 137

Query: 141 GADEQWRFVLEASMTSMVAMSTWLSGERLPWQCSFRHSEPRYVEQYWVHLGEHTQFDRPL 200
           G     +F +E S++S +A    L G+       F +  P  +  Y+ + G   +FD PL
Sbjct: 138 GMHRHKQFFIELSLSSFMACFKQLLGQAWRGSICFPYPAPDNLAHYYKYFGMDLRFDAPL 197

Query: 201 DLMRLPRHCLAQPW------------PNVSATAGQVARIEAREQ-----------LD--- 234
             + + ++ L QP              NV     + A++ +  Q           LD   
Sbjct: 198 CRISMAKNLLRQPSLFANQSLLYSQPENVDTHCAEDAQLPSASQSCIHGEAASPALDIQP 257

Query: 235 -------QLGFASSFLDCIYDY-----LHAHV-----QQTLSLEQTAQAFAMSPATLKRK 277
                  QL  A +    ++       L A +     ++TLSL + AQ   +SPATLKR+
Sbjct: 258 LQLPLRPQLNMAKAARQALFAQEFRLGLAAGIRLKLMRRTLSLPEMAQILEISPATLKRR 317

Query: 278 LHKHHTGFQQQVDRVHTHVALYLYQVKGFSNEEVAQYLRFNDTANFRRSFKRWTGSTPNL 337
           L +    + Q  D      ALY           +A  L F+D +NFRRSFKRWTG  P  
Sbjct: 318 LGEMGLNYGQLADESRLIRALYFLAEPEQDAHSIASSLSFSDASNFRRSFKRWTGQLPGY 377

Query: 338 IRQLL 342
            R  L
Sbjct: 378 FRYWL 382