Pairwise Alignments

Query, 508 a.a., cell wall degradation protein from Pseudomonas fluorescens FW300-N2E2

Subject, 571 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  223 bits (567), Expect = 2e-62
 Identities = 149/492 (30%), Positives = 235/492 (47%), Gaps = 31/492 (6%)

Query: 44  LQAFYQQNAGQEVWSDDERRGALQVQLQQLADDGLDPARYGLP--VEGATQ--------- 92
           L   YQ    Q +W D +  G +   +++  ++GL    Y  P  VE   Q         
Sbjct: 65  LSRVYQVRHYQALWEDKDYAGTMLDVIKRADEEGLAKEDYHYPKLVELYQQLSASNWQDE 124

Query: 93  -GPHCADIAISRRYLQALHDLRFGYLPQDRLEPVWKANPPPQDHPAVVLAIAG-LGLRNL 150
                 ++ +S   +     L  G +    L   W  +    D    +  +   +    +
Sbjct: 125 YKSSIFEVLLSDGIITYAIHLLNGKVNPSMLGKTWNYDEAHLDFDTTLKQLEEHIKAHTV 184

Query: 151 ADAFEQARPNLDLYRNLRGLYARLRQQPLA-EWQAVPGGPLLQPDKQDARVPALAQRLFN 209
           A+A     P +  Y  L+   A  +       +  +P   +++P      +  +A RL  
Sbjct: 185 AEAINGLAPKITPYHQLKQYLAHYKDLAARYPFTTIPYTEVIKPGTTSPSIKGIAARLKE 244

Query: 210 EGYLSTPPQLSDEH--------YSPMLVEAMKSFQAQHSLQADGVVGPWTVTELNISPAM 261
           +GYL     + D          Y  +L  A++ FQA HSL+ADGV+G  T+  LN+  A 
Sbjct: 245 QGYLDANATVQDATLVANAPLLYDNILEAAIRQFQADHSLKADGVIGAGTMAALNVPYAQ 304

Query: 262 RREQLRINLERMRWLAQDVEADSVLVNVAAAQLTVYQGGAPVWQTRTQVGRAQRQTPLLK 321
           R EQ+RINLER RWL+ ++ A+ ++VN+A  +L +++     W+T   +G+   +TPL K
Sbjct: 305 RVEQIRINLERARWLSANLSANYLIVNLAGYELLLFKDNNLSWRTDIIIGKIDSKTPLFK 364

Query: 322 SHVTRLTLNPTWTIPPTIMREDKLPEIRRDPEFLSRHNLRILDGDGLPLLAEDIDWEHPG 381
           S +  + +NPTWT+P +I  E  +   R+DP++L + + ++++  G P+ A  IDW    
Sbjct: 365 SKLKYVVVNPTWTVPNSISTE-IINHQRKDPDYLHKKHFKVVESSGTPVDASGIDWHSMT 423

Query: 382 N----LMLRQDPGPKNPLGKMAIRFPNPFSVYLHDTPSQALFSKGPRAFSSGCVRIEQVM 437
                    Q+PG  N LG +   FPN +S+YLHDTPS+ LF K  RAFS GC+R++  +
Sbjct: 424 RKNFPYWFVQEPGADNSLGLVKFIFPNQYSIYLHDTPSKNLFDKTDRAFSHGCIRVKDPL 483

Query: 438 RLRDLLVSPAERARTETL---LASESTHEFRLARPVPILLGYWTAQADSQGQAVYVPDIY 494
            L D L+S      +ETL   LA   T    L  P+ IL+ YWTA     G+  +  D+Y
Sbjct: 484 VLADKLLSANANWSSETLNNKLAEGKTENLFLDEPLDILIMYWTATI-KNGKIKFYNDVY 542

Query: 495 GRDATLSAARGR 506
            RD  L  A  R
Sbjct: 543 TRDPVLIEALNR 554