Pairwise Alignments

Query, 435 a.a., porin from Pseudomonas fluorescens FW300-N2C3

Subject, 430 a.a., OprD family porin from Pseudomonas fluorescens SBW25-INTG

 Score =  333 bits (854), Expect = 6e-96
 Identities = 196/444 (44%), Positives = 256/444 (57%), Gaps = 40/444 (9%)

Query: 2   SRKTITASSVFLSIT-LSVQAHADFLSDSKATLGMRNFYFNNDNRDGI-ADPSKTEEWAQ 59
           SR T TA +   ++   S  + A F  DS ATL  RN YFN D RDG  A  SK +EWAQ
Sbjct: 15  SRLTQTALASAATLAGFSPLSQAAFFEDSSATLETRNMYFNRDFRDGTSAQQSKRDEWAQ 74

Query: 60  GFMLDFKSGYTDGTVGFGVDGLGLLGVTLDSGKGRHVGSSMMPSDSDNRAVDEWSRLGLT 119
           GFML+ +SGYTDGTVGFGVD LG+LGV LDS   R  G+ ++P+  D RA DE+S+LGLT
Sbjct: 75  GFMLNLQSGYTDGTVGFGVDALGMLGVKLDSSPDR-TGTGLLPTHDDGRAADEYSKLGLT 133

Query: 120 GKVKMSKTEFRYGTLIPKLPILVANDGRVLPQTFEGGQITSSEFKGLTLTGGRIEHATGR 179
           GKVK+S TE + G+LIP+LPIL  NDGR+LPQTF GG ITS EFK L  T GR++ A  R
Sbjct: 134 GKVKISATELKIGSLIPELPILKPNDGRILPQTFNGGLITSKEFKNLVFTAGRLDKAKDR 193

Query: 180 GSTDQTGLA--------VAGGTRESNQFDFAGGDWNVTKELTAQYYYANLDNYYKQHFLG 231
             ++   +A        ++G T     F+F G D+    ++T  Y++A LD+ Y+QHFLG
Sbjct: 194 DDSNYEDIALNNKNSRFLSGAT--GKHFNFGGADYKFADKITGSYHFAQLDDVYRQHFLG 251

Query: 232 LIHTLALSDNQSLKTDLRYFKTDSSGANSAGTSGYRMSGYTKNGDGEIDNRTWSAALIYT 291
           L+    +    +  TDLR   +D +G+                  G+IDN   +    Y 
Sbjct: 252 LVAARPMGPG-TFGTDLRLAISDDTGSARG---------------GKIDNTALNGLFSYA 295

Query: 292 LGGHAITAGYQSVSDGSNFTQLSQGSLVDKGAGGASLYLYTDRLIQSFARAGERTVFGQY 351
           L GH ++AGYQ +S  S F  +           G+  YL     I  FA A ER+   +Y
Sbjct: 296 LNGHKLSAGYQHMSGDSAFPYVD----------GSDPYLVNFVQINDFAGAEERSWQARY 345

Query: 352 AYDFAALGVPGLKGSVMYLSGDNIKTTSGDNQKEWERDISLDYVLQSGALKGVGFGWRNG 411
            YDFA LG+PGL     YLSGDNIK  +G+  KEWER+  + YV+Q+G  K V    RN 
Sbjct: 346 DYDFAKLGIPGLSFMSRYLSGDNIKLKNGETGKEWERNSEIKYVVQTGTFKDVAVRLRNA 405

Query: 412 KSNSE-AARSVDQNRIFVSYSIPL 434
              S  +AR  D+ R+ VSYS+ L
Sbjct: 406 TYRSNYSARDADEMRLLVSYSVAL 429