Pairwise Alignments

Query, 435 a.a., porin from Pseudomonas fluorescens FW300-N2C3

Subject, 442 a.a., outer membrane porin, OprD family from Pseudomonas fluorescens SBW25-INTG

 Score =  272 bits (696), Expect = 1e-77
 Identities = 167/435 (38%), Positives = 236/435 (54%), Gaps = 23/435 (5%)

Query: 19  VQAHADFLSDSKATLGMRNFYFNNDNRDGIADPSKTE---EWAQGFMLDFKSGYTDGTVG 75
           + AHADF+ DS A + + N Y N   RD +   +K     +W QGF  +FKSGYTDG VG
Sbjct: 11  LSAHADFIDDSHADVTLLNRYLNQQGRDVVNSNAKAHSIRDWGQGFEFNFKSGYTDGPVG 70

Query: 76  FGVDGLGLLGVTLDSG--------KGRHVGSSMMPSDSDNRAVDEWSRLGLTGKVKMSKT 127
           FG+D     G+ LDSG        +GR+ GS M P D+  ++ D++  L  T K++ +K 
Sbjct: 71  FGLDLQAFYGLKLDSGGDLNDKDHQGRYPGS-MFPLDN-GKSADQFGVLSPTLKMRFAKD 128

Query: 128 EFRYGTLIPKLPILVANDGRVLPQTFEGGQITSSEFKGLTLTGGRIEHATGRGSTDQTGL 187
           E R GTL    P+L   DGR+  QT  G Q+ S +    T TGG I     R  T   G+
Sbjct: 129 ELRVGTLYGNNPVLANTDGRLYQQTNTGVQLVSKDLSDFTFTGGDIFKTKIRNETGDQGM 188

Query: 188 AVAGGTRESNQFDFAGGDWNVTKELTAQYYYANLDNYYKQHFLGLIHTLALSDNQSLKTD 247
             AGGT+ES++F F G D+   +  T   +Y+NL++YY+Q FLG     ALS   ++ TD
Sbjct: 189 ITAGGTQESDRFLFGGADYTGLQNTTVSLWYSNLEDYYQQFFLGAKRHDALSVG-AIDTD 247

Query: 248 LRYFKTDSSGANSAGTSGYRMSGYTKNGDGE--IDNRTWSAALIYTLGGHAITAGYQSVS 305
           +R F++   G N+ G   +  +G   +G G+  I+  T S    Y+L GH +  G Q  S
Sbjct: 248 VRVFRSLGVGGNADGDKDFAAAGLYGDGTGKGRINQTTASLLESYSLDGHTVGLGIQKNS 307

Query: 306 DGSNFTQLSQG-SLVDKGAG---GASLYLYTDRLIQSFARAGERTVFGQYAYDFAALGVP 361
             S+F  L  G +  D   G   GA     T+  +  F  AGERT   QY YDF  LG+ 
Sbjct: 308 GDSDFPYLDSGLNSGDNRQGPGSGADTPALTNLQLNKFQHAGERTWLAQYKYDFGKLGLT 367

Query: 362 GLKGSVMYLSGDNIKTTSGDNQKEWERDISLDYVLQSGALKGVGFGWRNGKSNSE--AAR 419
           GL  S  Y  GD+I+T  G    EWERD+++ Y + +G LKG+G  W+N  ++ +   A 
Sbjct: 368 GLTFSAGYAHGDDIRTAQG-TTSEWERDVAVAYQVPTGTLKGLGVTWKNAHASPDITGAT 426

Query: 420 SVDQNRIFVSYSIPL 434
             D+NR++VSY +PL
Sbjct: 427 VQDENRLYVSYVVPL 441