Pairwise Alignments

Query, 274 a.a., tRNA 2-thiocytidine biosynthesis protein TtcA from Pseudomonas fluorescens FW300-N2C3

Subject, 317 a.a., PP-loop domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  382 bits (981), Expect = e-111
 Identities = 184/266 (69%), Positives = 220/266 (82%), Gaps = 4/266 (1%)

Query: 3   TLTVNQI----KLQKRLRRQAGEAVADFNMIEDGDKVMVCLSGGKDSYTLLDVLMHLQKV 58
           TL+  QI    KLQKRLRR+ G A+AD+NMIE+GD VM CLSGGKDSY +LD+L++L + 
Sbjct: 5   TLSKKQITRLNKLQKRLRREVGSAIADYNMIEEGDTVMCCLSGGKDSYAMLDILVNLLQR 64

Query: 59  APIKFDIVAVNMDQKQPGFPEHVLPAYLESLGVEYHIVEKDTYSVVKELIPEGKTTCSLC 118
           AP+ F++VAVN+DQKQPGFPE +LPAYL+SL V YHI+EKDTYS+VK+ IPEGKTTCSLC
Sbjct: 65  APVNFNLVAVNLDQKQPGFPEDILPAYLDSLKVPYHILEKDTYSIVKDKIPEGKTTCSLC 124

Query: 119 SRLRRGTLYTFADEIGATKMALGHHRDDIVETFFLNMFYNGSLKAMPPKLRADDGRNVVI 178
           SRLRRGTLY FA +IGATK+ALGHHRDDI+ET FLNMFY G LKAMPPKL +DDG NVVI
Sbjct: 125 SRLRRGTLYGFAQKIGATKIALGHHRDDIIETMFLNMFYAGKLKAMPPKLLSDDGANVVI 184

Query: 179 RPLAYCSEKDIQAYSDFKQFPIIPCNLCGSQENLQRQVVKEMLQEWERKTPGRTESIFRG 238
           RPLAY  EKDI  Y++ K FPIIPCNLCGSQENL+R  VKEML+ W+++ PGR E+IF  
Sbjct: 185 RPLAYSREKDIAEYAELKAFPIIPCNLCGSQENLKRAAVKEMLKSWDKQFPGRIETIFTA 244

Query: 239 LQNVIPSQLADRNLFDFTNLRIDENA 264
           +QN  PSQ  DR+ FDF +L+ D +A
Sbjct: 245 MQNTSPSQGVDRDQFDFVSLKQDPDA 270