Pairwise Alignments

Query, 240 a.a., chemotaxis protein CheY from Pseudomonas fluorescens FW300-N2C3

Subject, 246 a.a., two component transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  229 bits (583), Expect = 5e-65
 Identities = 125/239 (52%), Positives = 157/239 (65%), Gaps = 16/239 (6%)

Query: 8   VLIVEDDQRLAELTREYLESNGLRVAIEGDGAVAAARIIAEQPDLVVLDLMLPGEDGLSI 67
           +LIV+DD  LA L  ++LE NG +  IE +GA A  RIIAEQP LV+LD+MLP  DGLSI
Sbjct: 7   ILIVDDDADLANLVADFLEMNGYKTEIEHNGAKAVERIIAEQPMLVILDVMLPDMDGLSI 66

Query: 68  CRKVRE-------HYDGPILMLTARTDDTDQIQGLDLGADDYVCKPVRPRLLLARIQALL 120
           CR VR         Y+GPILMLTA  +D D++ GL+ GADDY+ KPVR R+LLAR++ALL
Sbjct: 67  CRAVRHGHPGIEGSYNGPILMLTALNNDIDEVAGLETGADDYLAKPVRSRVLLARVRALL 126

Query: 121 RRSEPEPSVAQKQRRL--------QFGPLVVDDALREAWLQGNGIELTSAEFDLLWLLVS 172
           RR +PEP V +K  +L        +F  L +D   +     G  IELT+AEF+LLWLL S
Sbjct: 127 RR-KPEPPVTEKLSKLHSNNESLIEFDGLSIDKKYQRIQQHGQDIELTTAEFELLWLLAS 185

Query: 173 NAGRILSREEIFTALRGIGYDGQDRSIDVRISRIRPKIGDDPDHPRLIKTIRSKGYLFV 231
             G I  R+ I      +GY+   R+ID+R+SRIR K+GDDP H   IKTI  KGYLFV
Sbjct: 186 RPGEICDRDSISDYFSDLGYESSHRTIDLRVSRIRRKLGDDPSHATRIKTIHGKGYLFV 244