Pairwise Alignments

Query, 441 a.a., C4-dicarboxylate ABC transporter from Pseudomonas fluorescens FW300-N2C3

Subject, 450 a.a., two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  326 bits (836), Expect = 8e-94
 Identities = 191/448 (42%), Positives = 264/448 (58%), Gaps = 23/448 (5%)

Query: 5   VMVVDDEGSIRSAVEQWLSLSGFQVQLFSRADECLARLPEHFPGVILSDVRMPGLSGLEL 64
           ++VV+DE   R+ + Q L+ + + V+     ++ +  +    P ++ SD ++  L+G++L
Sbjct: 8   ILVVEDEPDQRALIVQMLTANQYLVESADSVEQAIVMIKASAPDLVFSDWKLGQLTGMDL 67

Query: 65  LAEVRRRDPDLPVILLTGHGDVPMAVEAMRDGAYDFLEKPFSPEALLGSLRRALDKRTLV 124
           L  VRR  PD+  I+ T +G +  AV+AM+ GA D+L KP+  ++LL ++ +      L 
Sbjct: 68  LNYVRREHPDMGFIIATAYGTITHAVDAMQAGADDYLAKPYQRQSLLLAIEKVAKSIALK 127

Query: 125 LENRRLHEQADARARLDGTLLGVSRALQNLRRQVLDLAALPVNVLIRGETGSGKELVARC 184
            +NRRL  +   +  L G L+G S  +Q + ++V  ++A    VLI GE+G+GKEL AR 
Sbjct: 128 RQNRRLSSELSQQQELVG-LVGRSALMQKVYQRVQRVSATDATVLIGGESGTGKELAARA 186

Query: 185 LHDFGPRASKPFVALNCAAIPEALFEAELFGHESGAFTGAQGKRIGKLEYADGGTLFLDE 244
           L+    R+ KPFVA+NC AIPE+L EAELFG E GA+TGA  ++IGKLE ADGGT+FLDE
Sbjct: 187 LYQLSARSHKPFVAINCGAIPESLAEAELFGAEKGAYTGANTQKIGKLEAADGGTVFLDE 246

Query: 245 IESMPLAQQVKLLRVLQEQKLERLGSNQSIAVDLRIIAATKPDLLDEARAGRFREDLAYR 304
           I  +PL QQ KLLR LQE  + RLG N  I +D+R+IAAT  DL  E   GRFREDL YR
Sbjct: 247 IGELPLLQQTKLLRFLQEGVISRLGQNSEIKLDVRVIAATHRDLQQEVAEGRFREDLYYR 306

Query: 305 LNIAELRLPPLRERREDIPLLFEHFTHNAAERLGRPTVPLSGPQLSHLLSHDWPGNVREL 364
           LN+  + +P LRER EDI  L EHF    A + G     LS   L  LL H WPGNVREL
Sbjct: 307 LNVVPIHMPALRERPEDIGRLVEHFLKLHANQYGMEVPKLSRDTLKSLLDHSWPGNVREL 366

Query: 365 ANVAERQVLGLDQLPTLETEPGQSLAA-----------------QQEAFEAQCLRAALAR 407
           AN  ER VL  D     E E  Q L A                 + E+FE  CLR AL R
Sbjct: 367 ANRIERFVLLGD-----EEEMVQELGAAPQPLDTKRFVLPEAGIEWESFEKDCLRQALDR 421

Query: 408 HKGDVKAVLEELQLPRRTFNEKMQRHGL 435
            +G+     + L L  + F  +++++ L
Sbjct: 422 FEGNRTKAAKCLGLSYKAFLYRLEKYQL 449